Browse Element(s) Details


OsAffx.8026.1.S1_at

Description tigr:9638.m02930
TID=OsAffx.8026.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative serine protease
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3349011/11hypothetical protein
LOC_Os10g335002/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g33460OsAffx.30655.1.S1_s_at11/1110+17289725..17294252GMC oxidoreductase family protein, expressed
LOC_Os10g33460OsAffx.8024.1.S1_x_at3/1110+17289725..17294252GMC oxidoreductase family protein, expressed
LOC_Os10g33460OsAffx.30655.2.S1_x_at1/1110+17289725..17294252GMC oxidoreductase family protein, expressed
LOC_Os10g33470NANA10+17296222..17299299transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g33480Os.47463.1.S1_x_at5/1110+17303343..17307043transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g33480Os.14491.2.S1_x_at5/1110+17303343..17307043transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g33484NANA10+17307676..17309738hypothetical protein
LOC_Os10g33490OsAffx.8026.1.S1_at11/1110+17316753..17321232hypothetical protein
LOC_Os10g33500OsAffx.30654.1.S1_at11/1110+17322711..17331734hypothetical protein
LOC_Os10g33500OsAffx.8026.1.S1_at2/1110+17322711..17331734hypothetical protein
LOC_Os10g33500Os.20772.1.S1_at1/1110+17322711..17331734hypothetical protein
LOC_Os10g33500OsAffx.20940.1.S1_at1/1110+17322711..17331734hypothetical protein
LOC_Os10g33510OsAffx.18504.1.S1_at11/1110+17334698..17335884hypothetical protein
LOC_Os10g33520OsAffx.30655.2.S1_x_at11/1110+17343989..17346285GMC oxidoreductase family protein
LOC_Os10g33520OsAffx.30655.2.S1_at11/1110+17343989..17346285GMC oxidoreductase family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8026.1.S1_at--543--3831Chr10:17317653..17317748 (25 bp)
CTGACGATTGAGGTGTTTCTCCCAC
LOC_Os10g33490
OsAffx.8026.1.S1_at--206--232Chr10:17330860..17330882 (23 bp)
ATATTGCTATTGTCAGTCTCAAGAA
LOC_Os10g33500
OsAffx.8026.1.S1_at--712--1471Chr10:17317556..17317580 (25 bp)
AGAATTTCAATGCTGTTCGCCTAGA
LOC_Os10g33490
OsAffx.8026.1.S1_at--201--2431Chr10:17317518..17317542 (25 bp)
AAAACGGTGCAAGAGCCATCTGAAA
LOC_Os10g33490
OsAffx.8026.1.S1_at--816--8111Chr10:17317479..17317503 (25 bp)
GGACGTGACACTAGACTTGGACCAT
LOC_Os10g33490
OsAffx.8026.1.S1_at--28--5692Chr10:17330976..17330998 (23 bp)
GACTTGGACCATTGATGGCCACAAT
LOC_Os10g33500
OsAffx.8026.1.S1_at--47--5331Chr10:17317150..17317174 (25 bp)
GAAGTGAAGCAACTCCTTTCCTACC
LOC_Os10g33490
OsAffx.8026.1.S1_at--796--6271Chr10:17316978..17317002 (25 bp)
GATGTAACAATCCTATGCCCATAGA
LOC_Os10g33490
OsAffx.8026.1.S1_at--1069--8691Chr10:17316813..17316837 (25 bp)
TGTGCCCGAGCCATACTGGTATCAT
LOC_Os10g33490
OsAffx.8026.1.S1_at--396--3571Chr10:17316802..17316826 (25 bp)
CATACTGGTATCATGGTTCGCTTGA
LOC_Os10g33490
OsAffx.8026.1.S1_at--192--6711Chr10:17316787..17316811 (25 bp)
GTTCGCTTGATGTAGATAGGTCTTA
LOC_Os10g33490
Target Sequence 
CTGACGATTGAGGTGTTTCTCCCACCGAACCAACGTTGTTGTGGGACATTGGAATTCTATAATTTAAACTATAATATTGC
TATTGTCAGTCTCAAGAAGAATTTCAATGCTGTTCGCCTAGAAGATATTTTTAGTAAAACGGTGCAAGAGCCATCTGAAA
AAGTAGTAGCTATAGGACGTGACACTAGACTTGGACCATTGATGGCCACAATTGGTAATGTGAAGCGTGGTAAAAAGGGA
TGCAAACTTGACTGCAAAGATCTTAAGCTGTCCACATGTAAAATCAAGAAGGCTGGGATTGGAGGCCCTCTTATTAATTT
TGATGGGAGTTTTGTTGGCATGAACTTCTATGATGGAAGTGAAGCAACTCCTTTCCTACCAAGGCATAAGATTGTCGAAG
TTTTAAGCAGAGTGAATGATTTACCATCAGAAAGTGGATGTAACAATCCTATGCCCATAGATATCGGTGAGGGAACGAAG
AAAAACAGGTGGCCTGTGCCCGAGCCATACTGGTATCATGGTTCGCTTGATGTAGATAGGTCTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8026.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis