Browse Element(s) Details


OsAffx.30655.2.S1_at

Description tigr:9638.m02933
TID=OsAffx.30655.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative alcohol oxidase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3352011/11GMC oxidoreductase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g33490OsAffx.8026.1.S1_at11/1110+17316753..17321232hypothetical protein
LOC_Os10g33500OsAffx.30654.1.S1_at11/1110+17322711..17331734hypothetical protein
LOC_Os10g33500OsAffx.8026.1.S1_at2/1110+17322711..17331734hypothetical protein
LOC_Os10g33500Os.20772.1.S1_at1/1110+17322711..17331734hypothetical protein
LOC_Os10g33500OsAffx.20940.1.S1_at1/1110+17322711..17331734hypothetical protein
LOC_Os10g33510OsAffx.18504.1.S1_at11/1110+17334698..17335884hypothetical protein
LOC_Os10g33520OsAffx.30655.2.S1_x_at11/1110+17343989..17346285GMC oxidoreductase family protein
LOC_Os10g33520OsAffx.30655.2.S1_at11/1110+17343989..17346285GMC oxidoreductase family protein
LOC_Os10g33530OsAffx.8024.1.S1_x_at11/1110+17347923..17348652hypothetical protein
LOC_Os10g33540Os.5644.1.S1_at11/1110+17353257..17355571GMC oxidoreductase family protein, expressed
LOC_Os10g33540OsAffx.30655.2.S1_x_at2/1110+17353257..17355571GMC oxidoreductase family protein, expressed
LOC_Os10g33550NANA10+17358554..17359831alcohol oxidase, putative
LOC_Os10g33560NANA10+17365848..17369399retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0009055molecular_functionelectron carrier activity
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30655.2.S1_at--403--6151Chr10:17344231..17344255 (25 bp)
GAGGTGACCATCGAGAAGGGCCCCA
LOC_Os10g33520
OsAffx.30655.2.S1_at--949--951Chr10:17344230..17344254 (25 bp)
AGGTGACCATCGAGAAGGGCCCCAT
LOC_Os10g33520
OsAffx.30655.2.S1_at--56--7391Chr10:17344228..17344252 (25 bp)
GTGACCATCGAGAAGGGCCCCATGT
LOC_Os10g33520
OsAffx.30655.2.S1_at--744--5811Chr10:17344226..17344250 (25 bp)
GACCATCGAGAAGGGCCCCATGTAC
LOC_Os10g33520
OsAffx.30655.2.S1_at--830--3491Chr10:17344208..17344232 (25 bp)
CATGTACCCGGGTTCCGACAAGTGG
LOC_Os10g33520
OsAffx.30655.2.S1_at--851--3171Chr10:17344201..17344225 (25 bp)
CCGGGTTCCGACAAGTGGGCCATCT
LOC_Os10g33520
OsAffx.30655.2.S1_at--848--7671Chr10:17344199..17344223 (25 bp)
GGGTTCCGACAAGTGGGCCATCTTC
LOC_Os10g33520
OsAffx.30655.2.S1_at--94--6711Chr10:17344197..17344221 (25 bp)
GTTCCGACAAGTGGGCCATCTTCTG
LOC_Os10g33520
OsAffx.30655.2.S1_at--216--5611Chr10:17344192..17344216 (25 bp)
GACAAGTGGGCCATCTTCTGCTCGG
LOC_Os10g33520
OsAffx.30655.2.S1_at--193--2231Chr10:17344191..17344215 (25 bp)
ACAAGTGGGCCATCTTCTGCTCGGC
LOC_Os10g33520
OsAffx.30655.2.S1_at--1143--1091Chr10:17344188..17344212 (25 bp)
AGTGGGCCATCTTCTGCTCGGCCCA
LOC_Os10g33520
Target Sequence 
GAGGTGACCATCGAGAAGGGCCCCATGTACCCGGGTTCCGACAAGTGGGCCATCTTCTGCTCGGCCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30655.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis