Browse Element(s) Details


Os.5644.1.S1_at

Description gb:NM_196987.1
DB_XREF= gi:37535333
TID=Os.5644.1
CNT=5
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.5644 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative oxidase (OSJNBb0044B19.5), mRNA.
PROD=putative oxidase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3354011/11GMC oxidoreductase family protein, expressed
LOC_Os02g201401/11Protein kinase domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g33500OsAffx.30654.1.S1_at11/1110+17322711..17331734hypothetical protein
LOC_Os10g33500OsAffx.8026.1.S1_at2/1110+17322711..17331734hypothetical protein
LOC_Os10g33500Os.20772.1.S1_at1/1110+17322711..17331734hypothetical protein
LOC_Os10g33500OsAffx.20940.1.S1_at1/1110+17322711..17331734hypothetical protein
LOC_Os10g33510OsAffx.18504.1.S1_at11/1110+17334698..17335884hypothetical protein
LOC_Os10g33520OsAffx.30655.2.S1_x_at11/1110+17343989..17346285GMC oxidoreductase family protein
LOC_Os10g33520OsAffx.30655.2.S1_at11/1110+17343989..17346285GMC oxidoreductase family protein
LOC_Os10g33530OsAffx.8024.1.S1_x_at11/1110+17347923..17348652hypothetical protein
LOC_Os10g33540Os.5644.1.S1_at11/1110+17353257..17355571GMC oxidoreductase family protein, expressed
LOC_Os10g33540OsAffx.30655.2.S1_x_at2/1110+17353257..17355571GMC oxidoreductase family protein, expressed
LOC_Os10g33550NANA10+17358554..17359831alcohol oxidase, putative
LOC_Os10g33560NANA10+17365848..17369399retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g33570NANA10+17371838..17376033retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0009055molecular_functionelectron carrier activity
GO:0016301molecular_functionkinase activity
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5644.1.S1_at--30--8431Chr10:17353642..17353666 (25 bp)
GGCCGATGCACTCGACGACGGACAA
LOC_Os10g33540
Os.5644.1.S1_at--623--1931Chr10:17353625..17353649 (25 bp)
ACGGACAAGTGGTCGGTGCTCTGCT
LOC_Os10g33540
Os.5644.1.S1_at--133--2231Chr10:17353621..17353645 (25 bp)
ACAAGTGGTCGGTGCTCTGCTCGGC
LOC_Os10g33540
Os.5644.1.S1_at--560--4391Chr10:17353427..17353451 (25 bp)
GCCAAGGGCATAGCCGACTCGATGG
LOC_Os10g33540
Os.5644.1.S1_at--690--1991Chr10:17353411..17353435 (25 bp)
ACTCGATGGCACACGGCAAGGAGCA
LOC_Os10g33540
Os.5644.1.S1_at--264--8071Chr10:17353392..17353416 (25 bp)
GGAGCAGCGCTAGTAAAATCTTTTT
LOC_Os10g33540
Os.5644.1.S1_at--794--4491Chr10:17353386..17353410 (25 bp)
GCGCTAGTAAAATCTTTTTCCTCTT
LOC_Os10g33540
Os.5644.1.S1_at--745--3672Chr10:17353373..17353397 (25 bp)
CTTTTTCCTCTTTTGTTCATGCATA
LOC_Os10g33540
Os.5644.1.S1_at--942--3291Chr10:17353343..17353367 (25 bp)
CAAATTTGCAATGTCCCTGCTTGTT
LOC_Os10g33540
Os.5644.1.S1_at--588--5191Chr10:17353336..17353360 (25 bp)
GCAATGTCCCTGCTTGTTAATCAAC
LOC_Os10g33540
Os.5644.1.S1_at--1145--7231Chr10:17353331..17353355 (25 bp)
GTCCCTGCTTGTTAATCAACTGTAA
LOC_Os10g33540
Target Sequence 
GGCCGATGCACTCGACGACGGACAAGTGGTCGGTGCTCTGCTCGGCGCACCAGATGGGGAGCTGCCGGATGGGCGCGAGC
CCCCGCGACGGCGCCGTCGACGTCGCCGGCGAGAGCTGGGAGGCGGAGGGGCTCTACGTCTGCGACGGCAGCCTGCTCCC
GACGGCGGTGGGCGTGAACCCGATGATCACCATACAGTCCATCGCCTACTGCGTCGCCAAGGGCATAGCCGACTCGATGG
CACACGGCAAGGAGCAGCGCTAGTAAAATCTTTTTCCTCTTTTGTTCATGCATAAATTGCAAATTTGCAATGTCCCTGCT
TGTTAATCAACTGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5644.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis