Browse Element(s) Details


OsAffx.18504.1.S1_at

Description tigr:9638.m02932
TID=OsAffx.18504.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3351011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g33484NANA10+17307676..17309738hypothetical protein
LOC_Os10g33490OsAffx.8026.1.S1_at11/1110+17316753..17321232hypothetical protein
LOC_Os10g33500OsAffx.30654.1.S1_at11/1110+17322711..17331734hypothetical protein
LOC_Os10g33500OsAffx.8026.1.S1_at2/1110+17322711..17331734hypothetical protein
LOC_Os10g33500Os.20772.1.S1_at1/1110+17322711..17331734hypothetical protein
LOC_Os10g33500OsAffx.20940.1.S1_at1/1110+17322711..17331734hypothetical protein
LOC_Os10g33510OsAffx.18504.1.S1_at11/1110+17334698..17335884hypothetical protein
LOC_Os10g33520OsAffx.30655.2.S1_x_at11/1110+17343989..17346285GMC oxidoreductase family protein
LOC_Os10g33520OsAffx.30655.2.S1_at11/1110+17343989..17346285GMC oxidoreductase family protein
LOC_Os10g33530OsAffx.8024.1.S1_x_at11/1110+17347923..17348652hypothetical protein
LOC_Os10g33540Os.5644.1.S1_at11/1110+17353257..17355571GMC oxidoreductase family protein, expressed
LOC_Os10g33540OsAffx.30655.2.S1_x_at2/1110+17353257..17355571GMC oxidoreductase family protein, expressed
LOC_Os10g33550NANA10+17358554..17359831alcohol oxidase, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18504.1.S1_at--165--1551Chr10:17334880..17334904 (25 bp)
AGCATATGGTTATTCCTGGGATCAT
LOC_Os10g33510
OsAffx.18504.1.S1_at--1102--6471Chr10:17334938..17334962 (25 bp)
GATAGCAAACGCCACTTTCTTTAAT
LOC_Os10g33510
OsAffx.18504.1.S1_at--900--5451Chr10:17335023..17335047 (25 bp)
GAACGTTCTGTTCCCTTTAGTGAAG
LOC_Os10g33510
OsAffx.18504.1.S1_at--772--7991Chr10:17335058..17335082 (25 bp)
GGATGAGTTCTTCTGCACATTTACT
LOC_Os10g33510
OsAffx.18504.1.S1_at--885--5111Chr10:17335072..17335096 (25 bp)
GCACATTTACTCTTAAGCCAATTGA
LOC_Os10g33510
OsAffx.18504.1.S1_at--592--7811Chr10:17335593..17335617 (25 bp)
GGTACTTGGGATCACCGGTGTTCAA
LOC_Os10g33510
OsAffx.18504.1.S1_at--919--3971Chr10:17335608..17335632 (25 bp)
CGGTGTTCAATTTCCGTGGTGATCT
LOC_Os10g33510
OsAffx.18504.1.S1_at--395--6431Chr10:17335628..17335652 (25 bp)
GATCTTGTTGCGATTACATACCTTG
LOC_Os10g33510
OsAffx.18504.1.S1_at--979--7591Chr10:17335658..17335682 (25 bp)
GGGCAACTGCAAGCATGGACCGTGA
LOC_Os10g33510
OsAffx.18504.1.S1_at--387--5331Chr10:17335681..17335705 (25 bp)
GAAGTCACTTCTATCTGGTATCCTC
LOC_Os10g33510
OsAffx.18504.1.S1_at--307--3891Chr10:17335695..17335719 (25 bp)
CTGGTATCCTCCGTAGAAAGACTAG
LOC_Os10g33510
Target Sequence 
AGCATATGGTTATTCCTGGGATCATAATCTCAATCAGTGGTAGAGAAGAGGCTGTTATGATAGCAAACGCCACTTTCTTT
AATAACAAGAAGAGTCAACTTAACTTTTGGGTGAGCTTTCCAAATTCTACCGGATATGAACAAGAACGTTCTGTTCCCTT
TAGTGAAGTGGTTCTTGAGGATGAGTTCTTCTGCACATTTACTCTTAAGCCAATTGAAGGCGGTTTTATAAAACCGATCC
AATTTGAAATTCAGCCTGTTAAAAGGATGGATGAAGTTCATTCATTTGTTTTTCCTAGAGAAGAATATATTACACCAACA
AGCTATCCAAATGGTTTTATTACACGAATGGTCAAACATTTTTTAAAAAGTCAACGGCGTCAAATATTTGGGGTGGAGGG
AGTATTTCATAATTGCAAGATGCATGAGTATGGGTACTTGGGATCACCGGTGTTCAATTTCCGTGGTGATCTTGTTGCGA
TTACATACCTTGATAAAGGGCAACTGCAAGCATGGACCGTGAAGTCACTTCTATCTGGTATCCTCCGTAGAAAGACTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18504.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis