Browse Element(s) Details


Os.20772.1.S1_at

Description gb:AK065634.1
DB_XREF= gi:32975652
TID=Os.20772.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.20772 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013034I10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013034I10, full insert sequence.
FL= gb:AK065634.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0393911/11ABC-2 type transporter family protein, expressed
LOC_Os10g335001/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g03880OsAffx.17555.1.S1_at11/119+1981104..1982035hypothetical protein
LOC_Os09g03890OsAffx.17556.1.S1_at11/119+1985009..1988544TPR Domain containing protein
LOC_Os09g03900Os.46012.3.S1_x_at3/119+1991384..1997508retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g03900Os.54691.1.S1_x_at2/119+1991384..1997508retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g03900Os.46012.2.S1_x_at2/119+1991384..1997508retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g03900Os.27088.1.A1_x_at1/119+1991384..1997508retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g03910NANA9+1999116..2000072hypothetical protein
LOC_Os09g03920NANA9+2001473..2003644retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g03939OsAffx.29710.1.S1_x_at11/119+2006493..2020289ABC-2 type transporter family protein, expressed
LOC_Os09g03939Os.20772.1.S1_at11/119+2006493..2020289ABC-2 type transporter family protein, expressed
LOC_Os09g03939OsAffx.24773.1.S1_at1/119+2006493..2020289ABC-2 type transporter family protein, expressed
LOC_Os09g03960OsAffx.29711.1.S1_at8/119+2032435..2036407expressed protein
LOC_Os09g03960Os.10255.1.S1_s_at2/119+2032435..2036407expressed protein
LOC_Os09g03970OsAffx.29712.1.S1_at11/119+2039785..2040266hypothetical protein
LOC_Os09g03980NANA9+2042701..2046221retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0010025biological_processwax biosynthesis
GO:0042626molecular_functionATPase activity, coupled to transmembrane movement of substances
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20772.1.S1_at--141--8691Chr09:2006629..2006653 (25 bp)
TGTGACTATATTGTGAACAGATTCA
LOC_Os09g03939
Os.20772.1.S1_at--402--10231Chr09:2006621..2006645 (25 bp)
TATTGTGAACAGATTCACTACTGGA
LOC_Os09g03939
Os.20772.1.S1_at--844--10811Chr09:2006619..2006643 (25 bp)
TTGTGAACAGATTCACTACTGGAGA
LOC_Os09g03939
Os.20772.1.S1_at--351--7351Chr09:2006617..2006641 (25 bp)
GTGAACAGATTCACTACTGGAGAAA
LOC_Os09g03939
Os.20772.1.S1_at--715--3315Chr10:17324897..17324979 (25 bp)
CACTACTGGAGAAACGCTTTTTAGT
LOC_Os10g33500
Os.20772.1.S1_at--52--3031Chr09:2006534..2006558 (25 bp)
AATCCGGGACTAAAAGATGTCCAGT
LOC_Os09g03939
Os.20772.1.S1_at--1040--551Chr09:2006533..2006557 (25 bp)
ATCCGGGACTAAAAGATGTCCAGTT
LOC_Os09g03939
Os.20772.1.S1_at--796--8691Chr09:2006532..2006556 (25 bp)
TCCGGGACTAAAAGATGTCCAGTTT
LOC_Os09g03939
Os.20772.1.S1_at--190--9831Chr09:2006524..2006548 (25 bp)
TAAAAGATGTCCAGTTTTAGTCCCG
LOC_Os09g03939
Os.20772.1.S1_at--119--1291Chr09:2006520..2006544 (25 bp)
AGATGTCCAGTTTTAGTCCCGGTTG
LOC_Os09g03939
Os.20772.1.S1_at--205--5991Chr09:2006519..2006543 (25 bp)
GATGTCCAGTTTTAGTCCCGGTTGA
LOC_Os09g03939
Target Sequence 
TGTGACTATATTGTGAACAGATTCACTACTGGAGAAACGCTTTTTAGTCCCGGTTAGGAACCCCCTATAGTACCGGTTTT
CTAACCGGGACTACGAATCCGGGACTAAAAGATGTCCAGTTTTAGTCCCGGTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20772.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis