Browse Element(s) Details


OsAffx.29710.1.S1_x_at

Description tigr:9637.m00218
TID=OsAffx.29710.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=ABC transporter, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0393911/11ABC-2 type transporter family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g03880OsAffx.17555.1.S1_at11/119+1981104..1982035hypothetical protein
LOC_Os09g03890OsAffx.17556.1.S1_at11/119+1985009..1988544TPR Domain containing protein
LOC_Os09g03900Os.46012.3.S1_x_at3/119+1991384..1997508retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g03900Os.54691.1.S1_x_at2/119+1991384..1997508retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g03900Os.46012.2.S1_x_at2/119+1991384..1997508retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g03900Os.27088.1.A1_x_at1/119+1991384..1997508retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g03910NANA9+1999116..2000072hypothetical protein
LOC_Os09g03920NANA9+2001473..2003644retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g03939OsAffx.29710.1.S1_x_at11/119+2006493..2020289ABC-2 type transporter family protein, expressed
LOC_Os09g03939Os.20772.1.S1_at11/119+2006493..2020289ABC-2 type transporter family protein, expressed
LOC_Os09g03939OsAffx.24773.1.S1_at1/119+2006493..2020289ABC-2 type transporter family protein, expressed
LOC_Os09g03960OsAffx.29711.1.S1_at8/119+2032435..2036407expressed protein
LOC_Os09g03960Os.10255.1.S1_s_at2/119+2032435..2036407expressed protein
LOC_Os09g03970OsAffx.29712.1.S1_at11/119+2039785..2040266hypothetical protein
LOC_Os09g03980NANA9+2042701..2046221retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0010025biological_processwax biosynthesis
GO:0042626molecular_functionATPase activity, coupled to transmembrane movement of substances
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29710.1.S1_x_at--357--5131Chr09:2007209..2007233 (25 bp)
GCACAATGCTAGTGGAAGGCCTGAT
LOC_Os09g03939
OsAffx.29710.1.S1_x_at--538--711Chr09:2007183..2007207 (25 bp)
ATGATCGTAGCAACCATCGTACCAG
LOC_Os09g03939
OsAffx.29710.1.S1_x_at--655--3231Chr09:2007173..2007197 (25 bp)
CAACCATCGTACCAGATTTCCTAAT
LOC_Os09g03939
OsAffx.29710.1.S1_x_at--75--6351Chr09:2007112..2007136 (25 bp)
GATGCTCACAAGTGGATTCTTCCAA
LOC_Os09g03939
OsAffx.29710.1.S1_x_at--970--91Chr09:2007097..2007121 (25 bp)
ATTCTTCCAACTTCCTAATAGCCTT
LOC_Os09g03939
OsAffx.29710.1.S1_x_at--1129--731Chr09:2007048..2007072 (25 bp)
ATGTACTACATCTCCTTTCACAAGT
LOC_Os09g03939
OsAffx.29710.1.S1_x_at--562--10051Chr09:2006984..2007008 (25 bp)
TAGTACTCAACCTTGAAGGACCCAT
LOC_Os09g03939
OsAffx.29710.1.S1_x_at--378--6951Chr09:2006895..2006919 (25 bp)
GTAGATCTTGCAGTACTTTGTGGTA
LOC_Os09g03939
OsAffx.29710.1.S1_x_at--545--851Chr09:2006765..2006789 (25 bp)
ATGGCATAGAGAACCTTTGCGCCCC
LOC_Os09g03939
OsAffx.29710.1.S1_x_at--57--4193Chr11:11465549..11465568 (20 bp)
CCCCTCGTGATTCTTGTTGGAAAAT
NONE
OsAffx.29710.1.S1_x_at--838--7771Chr09:2006691..2006715 (25 bp)
GGTGCACTTATATACAGCGAGAAAA
LOC_Os09g03939
Target Sequence 
GCACAATGCTAGTGGAAGGCCTGATGATGATCGTAGCAACCATCGTACCAGATTTCCTAATGGGGATCATAACAGGTGCT
GGTATACAAGGTATTATGATGCTCACAAGTGGATTCTTCCAACTTCCTAATAGCCTTCCAAACATAGTATGGAAGTACCC
AATGTACTACATCTCCTTTCACAAGTATGCACTGCAGGGGTTTTACAAGAATGAGTTCTTAGGTTTAGTACTCAACCTTG
AAGGACCCATAACAGTTAGTGGCGAGAAAGTTATTGCTGAGTTATTTCAAGTGGAAACAGGTCATTCAAAATGGGTAGAT
CTTGCAGTACTTTGTGGTATGATTATGACCTATAGACTATTGTTTGTAGTGATTATCAAGGTTCTTGATATAGTCAAGCC
CATACTTAAGGGGATGACATTTAGGTGCAACACTAAATGCATTCATGGCATAGAGAACCTTTGCGCCCCCTCGTGATTCT
TGTTGGAAAATAGTATATCTAATATTGTAATATTGCTTGGTGCACTTATATACAGCGAGAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29710.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis