Browse Element(s) Details


OsAffx.29711.1.S1_at

Description tigr:9637.m00221
TID=OsAffx.29711.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g039608/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g03939OsAffx.29710.1.S1_x_at11/119+2006493..2020289ABC-2 type transporter family protein, expressed
LOC_Os09g03939Os.20772.1.S1_at11/119+2006493..2020289ABC-2 type transporter family protein, expressed
LOC_Os09g03939OsAffx.24773.1.S1_at1/119+2006493..2020289ABC-2 type transporter family protein, expressed
LOC_Os09g03960OsAffx.29711.1.S1_at8/119+2032435..2036407expressed protein
LOC_Os09g03960Os.10255.1.S1_s_at2/119+2032435..2036407expressed protein
LOC_Os09g03970OsAffx.29712.1.S1_at11/119+2039785..2040266hypothetical protein
LOC_Os09g03980NANA9+2042701..2046221retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g03990Os.52067.1.S1_at11/119+2047654..2048739expressed protein
LOC_Os09g04000Os.26886.2.S1_s_at9/119+2050816..2053910transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g04000Os.26886.6.S1_s_at7/119+2050816..2053910transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g04000OsAffx.16467.1.S1_at6/119+2050816..2053910transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g04010Os.26886.1.S1_x_at10/119+2055416..2058804transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g04010Os.26886.3.S1_x_at6/119+2055416..2058804transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g04020NANA9+2061081..2063059transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29711.1.S1_at--661--9031Chr09:2036294..2036318 (25 bp)
TGCACCATGGGATGAAAGGAGAGCT
LOC_Os09g03960
OsAffx.29711.1.S1_at--471--1151Chr09:2036235..2036259 (25 bp)
AGTCGCTGGCCGGAGATGAGAAAAA
LOC_Os09g03960
OsAffx.29711.1.S1_at--1116--5511Chr09:2036216..2036240 (25 bp)
GAAAAAACGGCGGATTCTCACCTCG
LOC_Os09g03960
OsAffx.29711.1.S1_at--338--2571Chr09:2036211..2036235 (25 bp)
AACGGCGGATTCTCACCTCGAGCGG
LOC_Os09g03960
OsAffx.29711.1.S1_at--533--6691Chr09:2036176..2036200 (25 bp)
GTTCCAACAGCGATTGGAGCCAGTA
LOC_Os09g03960
OsAffx.29711.1.S1_at--694--4731NONE
GCTGTGCGTCCCGAACGAAAATCTG
NONE
OsAffx.29711.1.S1_at--830--5491Chr09:2034947..2034971 (25 bp)
GAAAATCTGGGCGTTACAAATTCCA
LOC_Os09g03960
OsAffx.29711.1.S1_at--216--6771Chr09:2034935..2034959 (25 bp)
GTTACAAATTCCAACCTCCCATTTG
LOC_Os09g03960
OsAffx.29711.1.S1_at--101--171Chr09:2034915..2034939 (25 bp)
ATTTGCTCTTCCTCTCCCTAAAACT
LOC_Os09g03960
OsAffx.29711.1.S1_at--984--7451NONE
GTGTCGAACACCTGTCAATATTTGA
NONE
OsAffx.29711.1.S1_at--1139--10451NONE
TTACCTTAGGGAAGACTGGTGGATC
NONE
Target Sequence 
TGCACCATGGGATGAAAGGAGAGCTGTTAGGAGGGGGAGAGGTGGCTCACGGCGGCGTGAGTCGCTGGCCGGAGATGAGA
AAAAACGGCGGATTCTCACCTCGAGCGGAGAGGCCGGGGTTCCAACAGCGATTGGAGCCAGTAGAGTGGTGCCGGAGGGG
CTGTGCGTCCCGAACGAAAATCTGGGCGTTACAAATTCCAACCTCCCATTTGCTCTTCCTCTCCCTAAAACTCTTGCTCC
ATCGAAGAGAAACAAGATCGCGCCGCCGCCGGGTGTCGAACACCTGTCAATATTTGACAAATGCTTAGCCCATGCTAATT
TAGACCCATGCATATTCATATTTGTCAAAATGCTTTATGCTTGGGCAATTACCTTAGGGAAGACTGGTGGATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29711.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis