Browse Element(s) Details


Os.52067.1.S1_at

Description gb:AK064651.1
DB_XREF= gi:32974669
TID=Os.52067.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52067 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-114-E09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-114-E09, full insert sequence.
FL= gb:AK064651.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0399011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g03960OsAffx.29711.1.S1_at8/119+2032435..2036407expressed protein
LOC_Os09g03960Os.10255.1.S1_s_at2/119+2032435..2036407expressed protein
LOC_Os09g03970OsAffx.29712.1.S1_at11/119+2039785..2040266hypothetical protein
LOC_Os09g03980NANA9+2042701..2046221retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g03990Os.52067.1.S1_at11/119+2047654..2048739expressed protein
LOC_Os09g04000Os.26886.2.S1_s_at9/119+2050816..2053910transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g04000Os.26886.6.S1_s_at7/119+2050816..2053910transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g04000OsAffx.16467.1.S1_at6/119+2050816..2053910transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g04010Os.26886.1.S1_x_at10/119+2055416..2058804transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g04010Os.26886.3.S1_x_at6/119+2055416..2058804transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g04020NANA9+2061081..2063059transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g04030OsAffx.7146.1.S1_at1/119+2068645..2071391hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52067.1.S1_at--717--971Chr09:2048237..2048261 (25 bp)
AGGAGCTGCGTCCTCTGTATCCTTA
LOC_Os09g03990
Os.52067.1.S1_at--621--9471Chr09:2048250..2048274 (25 bp)
TCTGTATCCTTATCTCGTCGATGAG
LOC_Os09g03990
Os.52067.1.S1_at--108--1251Chr09:2048297..2048321 (25 bp)
AGTTGGGTGGACATGTTCTCAAGAT
LOC_Os09g03990
Os.52067.1.S1_at--134--1231Chr09:2048330..2048354 (25 bp)
AGTTCATCGATGACGGTACAGCCGT
LOC_Os09g03990
Os.52067.1.S1_at--577--7031Chr09:2048345..2048369 (25 bp)
GTACAGCCGTCCGTATGAACGGCAT
LOC_Os09g03990
Os.52067.1.S1_at--999--7671Chr09:2048384..2048408 (25 bp)
GGGTTCTGGAGCTCAAGACGATGTT
LOC_Os09g03990
Os.52067.1.S1_at--65--6151Chr09:2048431..2048455 (25 bp)
GAGGTGACGAGGACGTTGCTCAACA
LOC_Os09g03990
Os.52067.1.S1_at--678--10751Chr09:2048463..2048487 (25 bp)
TTGACAAGATCCTCCATCGTGGTAT
LOC_Os09g03990
Os.52067.1.S1_at--740--6911Chr09:2048484..2048508 (25 bp)
GTATGACTTTGTGCATGCTGTGCCC
LOC_Os09g03990
Os.52067.1.S1_at--271--7291Chr09:2048503..2048527 (25 bp)
GTGCCCCTTTTGTTACATATAGCTG
LOC_Os09g03990
Os.52067.1.S1_at--572--3571Chr09:2048518..2048542 (25 bp)
CATATAGCTGCACGCCAATAGTTTT
LOC_Os09g03990
Target Sequence 
AGGAGCTGCGTCCTCTGTATCCTTATCTCGTCGATGAGGTGGAGAGGATCAGCACCAATGAGTTGGGTGGACATGTTCTC
AAGATGGGATTGGAGTTCATCGATGACGGTACAGCCGTCCGTATGAACGGCATGGCGAAGAAGCAGAGGGTTCTGGAGCT
CAAGACGATGTTGAAGCTAGATAGTATGAGGAAGGAGGTGACGAGGACGTTGCTCAACAACATGGATTGACAAGATCCTC
CATCGTGGTATGACTTTGTGCATGCTGTGCCCCTTTTGTTACATATAGCTGCACGCCAATAGTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52067.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis