Browse Element(s) Details


Os.26886.2.S1_s_at

Description gb:NM_196179.1
DB_XREF= gi:37533717
TID=Os.26886.2
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.26886 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0015J03.19), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein *s putative retroelements (OSJNBa0032N04.11), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2693011/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g2903011/11hypothetical protein
LOC_Os10g0414011/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g0762011/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g3222011/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g2379011/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g2395011/11hypothetical protein
LOC_Os01g3429011/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g3450011/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g1412010/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g4060010/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g1389010/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g1852010/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g2767010/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g342109/11hypothetical protein
LOC_Os09g040009/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g512809/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g454809/11hypothetical protein
LOC_Os05g351209/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g179809/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g084809/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g303909/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g282508/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g200608/11hypothetical protein
LOC_Os12g269908/11hypothetical protein
LOC_Os03g578208/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g221808/11hypothetical protein
LOC_Os02g409308/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g257008/11hypothetical protein
LOC_Os08g172108/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g230208/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g326748/11hypothetical protein
LOC_Os04g249408/11hypothetical protein
LOC_Os06g294108/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g205707/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g313807/11hypothetical protein
LOC_Os04g301207/11hypothetical protein
LOC_Os09g133007/11hypothetical protein
LOC_Os09g099007/11hypothetical protein
LOC_Os05g350907/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g330207/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g210807/11retrotransposon protein, putative, unclassified
LOC_Os11g192007/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g131407/11hypothetical protein
LOC_Os05g284307/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g261007/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g257507/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g231907/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g261907/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os07g153106/11hypothetical protein
LOC_Os06g213006/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g228906/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g144906/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g104406/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g255306/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g377366/11hypothetical protein
LOC_Os04g191705/11hypothetical protein
LOC_Os05g279905/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g024805/11hypothetical protein
LOC_Os10g070005/11hypothetical protein
LOC_Os01g325505/11hypothetical protein
LOC_Os05g110804/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g378504/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g187103/11hypothetical protein
LOC_Os09g166003/11hypothetical protein
LOC_Os08g164203/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g073503/11hypothetical protein
LOC_Os06g314103/11transposon protein, putative, unclassified
LOC_Os06g423503/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g227702/11hypothetical protein
LOC_Os04g135602/11hypothetical protein
LOC_Os05g195802/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g26900Os.26886.3.S1_x_at5/118+16271402..16277301retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g26900Os.45173.5.S1_x_at4/118+16271402..16277301retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g26900Os.45173.3.S1_x_at1/118+16271402..16277301retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g26900Os.45173.1.S1_x_at1/118+16271402..16277301retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g26900Os.47999.2.A1_x_at1/118+16271402..16277301retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g26900OsAffx.20877.1.S1_x_at1/118+16271402..16277301retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g26910NANA8+16277566..16281774retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g26920NANA8+16282332..16290638retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os08g26930Os.26886.2.S1_s_at11/118+16297616..16300731transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g26930Os.26886.6.S1_s_at11/118+16297616..16300731transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g26930OsAffx.16467.1.S1_at7/118+16297616..16300731transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g26930OsAffx.3425.1.S1_at1/118+16297616..16300731transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g26940OsAffx.5943.1.S1_at11/118+16310864..16311486hypothetical protein
LOC_Os08g26950OsAffx.5944.1.S1_at11/118+16319235..16320006hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26886.2.S1_s_at--109--28566Chr12:13516365..13516467 (25 bp)
AAGTGCTACTCCTTGTTAAGTTGGC
LOC_Os12g23790
Os.26886.2.S1_s_at--1094--48361Chr12:13516369..13516471 (25 bp)
GCTACTCCTTGTTAAGTTGGCAATG
LOC_Os12g23790
Os.26886.2.S1_s_at--788--108539Chr12:13516463..13516487 (25 bp)
TTGGCAATGGTGTCAGAAGCATGCA
LOC_Os12g23790
Os.26886.2.S1_s_at--1004--73732Chr12:13516472..13516496 (25 bp)
GTGTCAGAAGCATGCACCGGAAGTT
LOC_Os12g23790
Os.26886.2.S1_s_at--67--5957Chr12:13516507..13516531 (25 bp)
ATCCACAAGTGGTCACTGTCACAAA
LOC_Os12g23790
Os.26886.2.S1_s_at--165--75154Chr12:13516515..13516539 (25 bp)
GTGGTCACTGTCACAAATCTCCAGA
LOC_Os12g23790
Os.26886.2.S1_s_at--117--22751Chr12:13516529..13516553 (25 bp)
AAATCTCCAGAATGACCGTCAAGGA
LOC_Os12g23790
Os.26886.2.S1_s_at--497--45555Chr12:13516711..13516735 (25 bp)
GCCCATTGGATCCTTCTGGTCATAA
LOC_Os12g23790
Os.26886.2.S1_s_at--1018--16351Chr12:13516812..13516836 (25 bp)
AGCGATAGATGAAGCGTGGGCCCAA
LOC_Os12g23790
Os.26886.2.S1_s_at--169--53953Chr12:13516822..13516846 (25 bp)
GAAGCGTGGGCCCAATACGTGCAAA
LOC_Os12g23790
Os.26886.2.S1_s_at--280--31954Chr12:13516834..13516858 (25 bp)
CAATACGTGCAAAGAGGAGGCCTCA
LOC_Os12g23790
Target Sequence 
AAGTGCTACTCCTTGTTAAGTTGGCAATGGTGTCAGAAGCATGCACCGGAAGTTGCCTTCCTTGATCCACAAGTGGTCAC
TGTCACAAATCTCCAGAATGACCGTCAAGGAATGGTCAACTACATCTACGACACCTTGTGGTCCCGCCGAGACAAGGAGT
ACATTATTGCCCATTGGATCCTTCTGGTCATAACACCTAAGTGGAGTACATGTCACTACCTGAACTCCAGAATTGATAAG
AACGCATATGATTGGACCCCAATTAAACTAGCGATAGATGAAGCGTGGGCCCAATACGTGCAAAGAGGAGGCCTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26886.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis