Browse Element(s) Details


OsAffx.5944.1.S1_at

Description tigr:9636.m02659
TID=OsAffx.5944.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2695011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g26930Os.26886.2.S1_s_at11/118+16297616..16300731transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g26930Os.26886.6.S1_s_at11/118+16297616..16300731transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g26930OsAffx.16467.1.S1_at7/118+16297616..16300731transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g26930OsAffx.3425.1.S1_at1/118+16297616..16300731transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g26940OsAffx.5943.1.S1_at11/118+16310864..16311486hypothetical protein
LOC_Os08g26950OsAffx.5944.1.S1_at11/118+16319235..16320006hypothetical protein
LOC_Os08g26960NANA8+16328696..16329352retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g26970Os.46012.2.S1_x_at7/118+16339711..16345115retrotransposon protein, putative, unclassified
LOC_Os08g26970Os.27088.1.A1_x_at4/118+16339711..16345115retrotransposon protein, putative, unclassified
LOC_Os08g26970Os.46012.3.S1_x_at3/118+16339711..16345115retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5944.1.S1_at--318--3611Chr08:16319306..16319330 (25 bp)
CATTGTGGACGCTGCTCTAGGAGGT
LOC_Os08g26950
OsAffx.5944.1.S1_at--427--7371Chr08:16319335..16319359 (25 bp)
GTGAGGCTAACAGCACTAGTGAAGG
LOC_Os08g26950
OsAffx.5944.1.S1_at--57--9231Chr08:16319392..16319416 (25 bp)
TCCAGGAGTTTGAGGCAAGCCAACA
LOC_Os08g26950
OsAffx.5944.1.S1_at--306--5131Chr08:16319433..16319457 (25 bp)
GCACACAAGGCGTCACTGGAGGAAT
LOC_Os08g26950
OsAffx.5944.1.S1_at--5--7291Chr08:16319458..16319482 (25 bp)
GTGCCAGTGAGGCTACTCAGGTCAC
LOC_Os08g26950
OsAffx.5944.1.S1_at--926--3891Chr08:16319483..16319507 (25 bp)
CTGGGCGGTACTTGGGATTGTCATT
LOC_Os08g26950
OsAffx.5944.1.S1_at--1043--6591Chr08:16319498..16319522 (25 bp)
GATTGTCATTGTTGTTGGCGCGGCA
LOC_Os08g26950
OsAffx.5944.1.S1_at--1046--2671Chr08:16319581..16319711 (25 bp)
AAGCGTGTGAATTAGATCCTGCCAT
LOC_Os08g26950
OsAffx.5944.1.S1_at--1116--651Chr08:16319714..16319738 (25 bp)
ATGCAATCATCCGTGTTGGGCTAAA
LOC_Os08g26950
OsAffx.5944.1.S1_at--1052--1631Chr08:16319745..16319769 (25 bp)
AGCCCGTCAAAGGATGCTCATTCTA
LOC_Os08g26950
OsAffx.5944.1.S1_at--1104--9071Chr08:16319759..16319783 (25 bp)
TGCTCATTCTAGACAGGCTCCAAAG
LOC_Os08g26950
Target Sequence 
CATTGTGGACGCTGCTCTAGGAGGTGGTGGTGAGGCTAACAGCACTAGTGAAGGTGACTTGGGAAGGTGGAGGCGAGGCC
AGCTGCTCCAGGAGTTTGAGGCAAGCCAACAGTGGTGGCTTGGGGAAGCACACAAGGCGTCACTGGAGGAATGTGCCAGT
GAGGCTACTCAGGTCACCTGGGCGGTACTTGGGATTGTCATTGTTGTTGGCGCGGCAGCACTCCGACTCCACAGTGGCGG
TGGTGCAACAGCTACGGGCTGTAATGTGAAATGTGAAGCGTGTGAATTAGATCCTGCCATTGATGCAATCATCCGTGTTG
GGCTAAAGAGTAGAGCCCGTCAAAGGATGCTCATTCTAGACAGGCTCCAAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5944.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis