Browse Element(s) Details


OsAffx.5943.1.S1_at

Description tigr:9636.m02658
TID=OsAffx.5943.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2694011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g26920NANA8+16282332..16290638retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os08g26930Os.26886.2.S1_s_at11/118+16297616..16300731transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g26930Os.26886.6.S1_s_at11/118+16297616..16300731transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g26930OsAffx.16467.1.S1_at7/118+16297616..16300731transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g26930OsAffx.3425.1.S1_at1/118+16297616..16300731transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g26940OsAffx.5943.1.S1_at11/118+16310864..16311486hypothetical protein
LOC_Os08g26950OsAffx.5944.1.S1_at11/118+16319235..16320006hypothetical protein
LOC_Os08g26960NANA8+16328696..16329352retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5943.1.S1_at--98--7271Chr08:16311390..16311414 (25 bp)
GTCCTTGCTGCCTCCATGTATATAC
LOC_Os08g26940
OsAffx.5943.1.S1_at--267--9111Chr08:16311385..16311409 (25 bp)
TGCTGCCTCCATGTATATACCACTG
LOC_Os08g26940
OsAffx.5943.1.S1_at--326--10191Chr08:16311370..16311394 (25 bp)
TATACCACTGCAGCTTCCTTGGCAA
LOC_Os08g26940
OsAffx.5943.1.S1_at--551--4911Chr08:16311358..16311382 (25 bp)
GCTTCCTTGGCAACTAATTGATCTG
LOC_Os08g26940
OsAffx.5943.1.S1_at--102--8231Chr08:16311354..16311374 (21 bp)
GGCAACTAATTGATCTGAACGAGCA
LOC_Os08g26940
OsAffx.5943.1.S1_at--73--6411Chr08:16310944..16311363 (25 bp)
GATCTGAACGAGCAGGACGTGTATC
LOC_Os08g26940
OsAffx.5943.1.S1_at--177--8111Chr08:16310930..16310954 (25 bp)
GGACGTGTATCTGTATATCCCCGAC
LOC_Os08g26940
OsAffx.5943.1.S1_at--772--7431Chr08:16310926..16310950 (25 bp)
GTGTATCTGTATATCCCCGACAGGA
LOC_Os08g26940
OsAffx.5943.1.S1_at--63--8771Chr08:16310919..16310943 (25 bp)
TGTATATCCCCGACAGGAACGGCGC
LOC_Os08g26940
OsAffx.5943.1.S1_at--386--951Chr08:16310905..16310929 (25 bp)
AGGAACGGCGCCTGTGTTGTCGCAT
LOC_Os08g26940
OsAffx.5943.1.S1_at--678--3851Chr08:16310894..16310918 (25 bp)
CTGTGTTGTCGCATGGCAACAACCA
LOC_Os08g26940
Target Sequence 
GTCCTTGCTGCCTCCATGTATATACCACTGCAGCTTCCTTGGCAACTAATTGATCTGAACGAGCAGGACGTGTATCTGTA
TATCCCCGACAGGAACGGCGCCTGTGTTGTCGCATGGCAACAACCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5943.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis