Browse Element(s) Details


Os.26886.6.S1_s_at

Description gb:NM_195718.1
DB_XREF= gi:37532795
TID=Os.26886.6
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.26886 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0015J03.19), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0093I09.24), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2903011/11hypothetical protein
LOC_Os10g1798011/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g2693011/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g3429011/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g5128011/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g0762011/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g2494010/11hypothetical protein
LOC_Os09g1330010/11hypothetical protein
LOC_Os11g2057010/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g3450010/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g1852010/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g2395010/11hypothetical protein
LOC_Os07g3222010/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g4060010/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g0848010/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g282509/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g276709/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g221809/11hypothetical protein
LOC_Os05g284309/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g138909/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g041409/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g578209/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g303909/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g257009/11hypothetical protein
LOC_Os05g351208/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g141208/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g231908/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g172108/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g255308/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g237908/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g342108/11hypothetical protein
LOC_Os10g257508/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g454808/11hypothetical protein
LOC_Os11g230208/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g099007/11hypothetical protein
LOC_Os09g040007/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g350907/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g326747/11hypothetical protein
LOC_Os02g261907/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os06g294107/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g200607/11hypothetical protein
LOC_Os05g104407/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g228907/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g192007/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g153107/11hypothetical protein
LOC_Os05g110807/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g301206/11hypothetical protein
LOC_Os08g313806/11hypothetical protein
LOC_Os12g269906/11hypothetical protein
LOC_Os08g164206/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g024806/11hypothetical protein
LOC_Os06g210806/11retrotransposon protein, putative, unclassified
LOC_Os01g325506/11hypothetical protein
LOC_Os04g191706/11hypothetical protein
LOC_Os11g330205/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g166005/11hypothetical protein
LOC_Os02g409305/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g144905/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g131404/11hypothetical protein
LOC_Os06g423504/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g070004/11hypothetical protein
LOC_Os03g377364/11hypothetical protein
LOC_Os05g279904/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g213004/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g261004/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g314103/11transposon protein, putative, unclassified
LOC_Os06g378503/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g073502/11hypothetical protein
LOC_Os10g187102/11hypothetical protein
LOC_Os05g195802/11hypothetical protein
LOC_Os04g135601/11hypothetical protein
LOC_Os11g227701/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g28980OsAffx.31069.5.S1_at2/117+17000046..17005184hypothetical protein
LOC_Os07g28980OsAffx.31069.5.S1_x_at1/117+17000046..17005184hypothetical protein
LOC_Os07g28990OsAffx.16466.1.S1_at11/117+17008084..17008572expressed protein
LOC_Os07g29000Os.26886.1.S1_x_at8/117+17009733..17012624transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g29000Os.26886.3.S1_x_at6/117+17009733..17012624transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g29000OsAffx.16244.1.S1_x_at1/117+17009733..17012624transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g29010NANA7+17015413..17016984transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g29020NANA7+17019392..17020946hypothetical protein
LOC_Os07g29030Os.26886.6.S1_s_at11/117+17022923..17025343hypothetical protein
LOC_Os07g29030Os.26886.2.S1_s_at11/117+17022923..17025343hypothetical protein
LOC_Os07g29030OsAffx.16467.1.S1_at7/117+17022923..17025343hypothetical protein
LOC_Os07g29030OsAffx.8338.1.S1_x_at3/117+17022923..17025343hypothetical protein
LOC_Os07g29030OsAffx.8469.1.S1_x_at2/117+17022923..17025343hypothetical protein
LOC_Os07g29030OsAffx.3425.1.S1_at1/117+17022923..17025343hypothetical protein
LOC_Os07g29030OsAffx.10020.1.S1_x_at1/117+17022923..17025343hypothetical protein
LOC_Os07g29040OsAffx.28654.1.S1_at8/117+17027048..17027537hypothetical protein
LOC_Os07g29050OsAffx.5478.1.S1_at10/117+17028739..17030885hypothetical protein
LOC_Os07g29060OsAffx.5479.1.S1_at11/117+17035157..17037393hypothetical protein
LOC_Os07g29060Os.23212.1.S1_at2/117+17035157..17037393hypothetical protein
LOC_Os07g29060Os.18229.3.S1_x_at1/117+17035157..17037393hypothetical protein
LOC_Os07g29070OsAffx.16468.1.S1_at11/117+17037743..17039222calcineurin-like phosphoesterase family protein, putative
LOC_Os07g29080OsAffx.18924.2.S1_x_at7/117+17039918..17042552transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g29080OsAffx.19842.1.S1_at1/117+17039918..17042552transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g29080OsAffx.19421.1.S1_at1/117+17039918..17042552transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g29080OsAffx.18924.3.S1_at1/117+17039918..17042552transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g29090OsAffx.19421.2.S1_at2/117+17042624..17043496transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g29090OsAffx.31898.1.S1_at1/117+17042624..17043496transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g29100OsAffx.20497.1.S1_at3/117+17046432..17049662transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g29100OsAffx.3348.1.S1_at1/117+17046432..17049662transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g29100OsAffx.31287.1.S1_at1/117+17046432..17049662transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g29100OsAffx.22387.1.S1_at1/117+17046432..17049662transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26886.6.S1_s_at--659--106137Chr11:14433063..14433087 (25 bp)
TTCGACCTCTACAGGCTCCGAGCGG
LOC_Os11g26100
Os.26886.6.S1_s_at--20--73347Chr11:12759311..12759413 (25 bp)
GTGCTACTCCTTGTTAAGTTGGCAA
LOC_Os11g23020
Os.26886.6.S1_s_at--66--5957Chr12:13516507..13516531 (25 bp)
ATCCACAAGTGGTCACTGTCACAAA
LOC_Os12g23790
Os.26886.6.S1_s_at--166--75154Chr12:13516515..13516539 (25 bp)
GTGGTCACTGTCACAAATCTCCAGA
LOC_Os12g23790
Os.26886.6.S1_s_at--116--22751Chr12:13516529..13516553 (25 bp)
AAATCTCCAGAATGACCGTCAAGGA
LOC_Os12g23790
Os.26886.6.S1_s_at--496--45555Chr12:13516711..13516735 (25 bp)
GCCCATTGGATCCTTCTGGTCATAA
LOC_Os12g23790
Os.26886.6.S1_s_at--476--25952Chr12:13516783..13516807 (25 bp)
AACGCATATGATTGGACCCCAATTC
LOC_Os12g23790
Os.26886.6.S1_s_at--1132--80957Chr11:19019056..19019080 (25 bp)
GGACCCCAATTCAACTAGCGATAGA
LOC_Os11g33020
Os.26886.6.S1_s_at--1019--16351Chr12:13516812..13516836 (25 bp)
AGCGATAGATGAAGCGTGGGCCCAA
LOC_Os12g23790
Os.26886.6.S1_s_at--168--53953Chr12:13516822..13516846 (25 bp)
GAAGCGTGGGCCCAATACGTGCAAA
LOC_Os12g23790
Os.26886.6.S1_s_at--281--31954Chr12:13516834..13516858 (25 bp)
CAATACGTGCAAAGAGGAGGCCTCA
LOC_Os12g23790
Target Sequence 
TTCGACCTCTACAGGCTCCGAGCGGTAGACACATGCCTCCTTAAGTGCTACTCCTTGTTAAGTTGGCAATGGTGTAAGAA
GAATACACCGGAAGTTGCCTTCCTTGATCCACAAGTGGTCACTGTCACAAATCTCCAGAATGACCGTCAAGGAATGGTCA
ACTACATCTACGACACCTTGTGGACCCGCCGAGACAAGGAGTATATTATGTGCGCCTATAATCAATATGCCCATTGGATC
CTTCTGGTCATAACACCTAAGTGGAGTACATGTCACTACCTGAACTCCAGAATTGATAAGAACGCATATGATTGGACCCC
AATTCAACTAGCGATAGATGAAGCGTGGGCCCAATACGTGCAAAGAGGAGGCCTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26886.6.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis