Browse Element(s) Details


OsAffx.19421.2.S1_at

Description tigr:9639.m04428
TID=OsAffx.19421.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4744611/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g233402/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g290902/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g130202/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g280202/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g179602/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g339602/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g157501/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g47443Os.45976.1.S1_x_at1/1111+28059342..28063737transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g47444Os.35344.3.S1_x_at9/1111+28074396..28080488Transposable element protein, putative, MuDR
LOC_Os11g47444Os.35344.18.S1_x_at7/1111+28074396..28080488Transposable element protein, putative, MuDR
LOC_Os11g47444OsAffx.22940.5.S1_x_at3/1111+28074396..28080488Transposable element protein, putative, MuDR
LOC_Os11g47445OsAffx.18924.2.S1_x_at8/1111+28083491..28086431transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g47445OsAffx.18924.4.S1_at3/1111+28083491..28086431transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g47445OsAffx.19842.1.S1_at2/1111+28083491..28086431transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g47446OsAffx.19421.2.S1_at11/1111+28088270..28092704transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g47446OsAffx.28898.1.S1_at2/1111+28088270..28092704transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g47446OsAffx.31287.1.S1_at1/1111+28088270..28092704transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g47446OsAffx.3348.1.S1_at1/1111+28088270..28092704transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g47446OsAffx.20497.1.S1_at1/1111+28088270..28092704transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g47446OsAffx.22387.1.S1_at1/1111+28088270..28092704transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g47447Os.55690.1.S1_at11/1111+28095508..28097914Disease resistance protein RPP8, putative, expressed
LOC_Os11g47448OsAffx.31070.2.S1_at1/1111+28104505..28106482hypothetical protein
LOC_Os11g47449OsAffx.13772.1.S1_x_at1/1111+28109841..28110805hypothetical protein
LOC_Os11g47449OsAffx.13772.1.S1_at1/1111+28109841..28110805hypothetical protein
LOC_Os11g47451NANA11+28111713..28114492retrotransposon protein, putative, unclassified
LOC_Os11g47452NANA11+28115807..28117951retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19421.2.S1_at--666--8998Chr12:7214956..7214976 (21 bp)
TGAAGAATGCTCCACGTCGCTCCAA
LOC_Os12g13020
OsAffx.19421.2.S1_at--450--4798Chr12:7214960..7214984 (25 bp)
GCTCCACGTCGCTCCAAAAGGAAAG
LOC_Os12g13020
OsAffx.19421.2.S1_at--489--2312Chr05:8870800..8870819 (20 bp)
AAAGGAAAGCCCAAGTCGCAACTGA
LOC_Os05g15750
OsAffx.19421.2.S1_at--588--2651Chr11:28088656..28088680 (25 bp)
AAGCCCAAGTCGCAACTGAACCTGA
LOC_Os11g47446
OsAffx.19421.2.S1_at--631--2851Chr11:28088650..28088674 (25 bp)
AAGTCGCAACTGAACCTGAAGCTGA
LOC_Os11g47446
OsAffx.19421.2.S1_at--1152--5391Chr11:28088627..28088651 (25 bp)
GAAGCTACAGCTGTTGTGCGCAAAA
LOC_Os11g47446
OsAffx.19421.2.S1_at--676--8811Chr11:28088616..28088640 (25 bp)
TGTTGTGCGCAAAACAGCTTCAAGC
LOC_Os11g47446
OsAffx.19421.2.S1_at--284--5491Chr11:28088402..28088583 (25 bp)
GAACATGCTGTTGAAGGAACCGATT
LOC_Os11g47446
OsAffx.19421.2.S1_at--313--9671Chr11:28088370..28088394 (25 bp)
TCAGCCGATGGGAGTCGCTAAGTCG
LOC_Os11g47446
OsAffx.19421.2.S1_at--732--7651Chr11:28088361..28088385 (25 bp)
GGGAGTCGCTAAGTCGCCATGCTGT
LOC_Os11g47446
OsAffx.19421.2.S1_at--1131--4833Chr11:28088354..28088378 (25 bp)
GCTAAGTCGCCATGCTGTCGTGTTC
LOC_Os11g47446
Target Sequence 
TGAAGAATGCTCCACGTCGCTCCAAAAGGAAAGCCCAAGTCGCAACTGAACCTGAAGCTGAAGCTACAGCTGTTGTGCGC
AAAACAGCTTCAAGCAAACCCAAGAAAAGGAGGGGCGAGCGAGGGAAGAACATGCTGTTGAAGGAACCGATTTGGGGAAT
CAGCCGATGGGAGTCGCTAAGTCGCCATGCTGTCGTGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19421.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis