Browse Element(s) Details


OsAffx.31287.1.S1_at

Description tigr:9639.m03052
TID=OsAffx.31287.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3398011/11hypothetical protein
LOC_Os12g130101/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g474461/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g233201/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g291001/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g266801/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g339701/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g087101/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g33946NANA11+19331287..19333706hypothetical protein
LOC_Os11g33950OsAffx.31286.1.S1_at10/1111+19335685..19336289hypothetical protein
LOC_Os11g33960OsAffx.2735.1.S1_at9/1111+19338980..19345603transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g33970OsAffx.7288.1.S1_at11/1111+19357334..19358206expressed protein
LOC_Os11g33980OsAffx.31287.1.S1_at11/1111+19358315..19362454hypothetical protein
LOC_Os11g33980OsAffx.20497.1.S1_at1/1111+19358315..19362454hypothetical protein
LOC_Os11g33990OsAffx.7289.1.S1_at11/1111+19368786..19369638expressed protein
LOC_Os11g34000OsAffx.30422.2.S1_x_at11/1111+19370862..19371146hypothetical protein
LOC_Os11g34000OsAffx.30422.1.S1_x_at1/1111+19370862..19371146hypothetical protein
LOC_Os11g34010OsAffx.19147.1.S1_at11/1111+19372416..19372758hypothetical protein
LOC_Os11g34020OsAffx.19148.1.S1_x_at11/1111+19374030..19374944expressed protein
LOC_Os11g34030OsAffx.7291.1.S1_at11/1111+19387263..19388599hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31287.1.S1_at--26--2831Chr11:19358784..19358808 (25 bp)
AAGTTCCCAACCAGGTGACAGTACG
LOC_Os11g33980
OsAffx.31287.1.S1_at--1149--2071Chr11:19358767..19358791 (25 bp)
ACAGTACGGGATGAAGTGGTCAGTA
LOC_Os11g33980
OsAffx.31287.1.S1_at--704--8591Chr11:19358751..19358775 (25 bp)
TGGTCAGTAGGGACGAGGATTTCAT
LOC_Os11g33980
OsAffx.31287.1.S1_at--700--991Chr11:19358736..19358760 (25 bp)
AGGATTTCATGGTCGTAGCAGAAGA
LOC_Os11g33980
OsAffx.31287.1.S1_at--1064--6291Chr11:19358620..19358644 (25 bp)
GATGATGATGTTGTTAGCGACGATG
LOC_Os11g33980
OsAffx.31287.1.S1_at--707--6251Chr11:19358566..19358590 (25 bp)
GATGGTAATATCAGCGTACATGATG
LOC_Os11g33980
OsAffx.31287.1.S1_at--1142--6611Chr11:19358474..19358498 (25 bp)
GTTGGAGAACTTCGAAGCATTACGA
LOC_Os11g33980
OsAffx.31287.1.S1_at--1152--6419Chr12:7209297..7209321 (25 bp)
GATCTTTTGTACGATGAGGCAAAGG
LOC_Os12g13010
OsAffx.31287.1.S1_at--224--2891Chr11:19358416..19358440 (25 bp)
AAGGGTTGCGATAAGTATTTCACAT
LOC_Os11g33980
OsAffx.31287.1.S1_at--940--3311Chr11:19358396..19358420 (25 bp)
CACATTGTTGCGGATGATGCTTGAA
LOC_Os11g33980
OsAffx.31287.1.S1_at--649--10711Chr11:19358389..19358413 (25 bp)
TTGCGGATGATGCTTGAACTTATGA
LOC_Os11g33980
Target Sequence 
AAGTTCCCAACCAGGTGACAGTACGGGATGAAGTGGTCAGTAGGGACGAGGATTTCATGGTCGTAGCAGAAGAAGAAGAA
GAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGCC
CGCTGATGATGATGTTGTTAGCGACGATGGTCAGCACAGTACAGTTGATGATGTCGATGATGGTAATATCAGCGTACATG
ATGGTAATTTTGATTTGGAAGAGATGTTATGTCATGCTGAACTTGAGCTTGTAGCTGGGTCCGCTCATGGGTTGGAGAAC
TTCGAAGCATTACGAAAGACAATGAAGGATCTTTTGTACGATGAGGCAAAGGGTTGCGATAAGTATTTCACATTGTTGCG
GATGATGCTTGAACTTATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31287.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis