Browse Element(s) Details


OsAffx.2735.1.S1_at

Description tigr:9630.m02330
TID=OsAffx.2735.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2494011/11hypothetical protein
LOC_Os09g1286010/11hypothetical protein
LOC_Os11g339609/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g24900NANA2+14430684..14431332retrotransposon protein, putative, unclassified
LOC_Os02g24910OsAffx.12179.1.S1_at11/112+14433376..14434182hypothetical protein
LOC_Os02g24910OsAffx.12179.1.S1_x_at11/112+14433376..14434182hypothetical protein
LOC_Os02g24920OsAffx.12180.1.S1_at11/112+14438064..14438342hypothetical protein
LOC_Os02g24930OsAffx.12181.1.S1_at11/112+14447098..14448113hypothetical protein
LOC_Os02g24940OsAffx.2735.1.S1_at11/112+14454786..14457518hypothetical protein
LOC_Os02g24950NANA2+14457745..14461411transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g24960NANA2+14466045..14467124retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g24970NANA2+14468822..14472285retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g24980OsAffx.26046.1.S1_at1/112+14477072..14478682hypothetical protein
LOC_Os02g24990OsAffx.13882.2.S1_at2/112+14480500..14482427retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2735.1.S1_at--338--9933Chr11:19344131..19344155 (25 bp)
TACTGGAACTCATGGACGGATCGAC
LOC_Os11g33960
OsAffx.2735.1.S1_at--70--2973Chr11:19344368..19344392 (25 bp)
AATGGACTGCCACATGGACGCCTTC
LOC_Os11g33960
OsAffx.2735.1.S1_at--93--7792Chr11:19344404..19344428 (25 bp)
GGTGCTGTGTCCAAGTCTACTGTTA
LOC_Os11g33960
OsAffx.2735.1.S1_at--624--1133Chr11:19344417..19344441 (25 bp)
AGTCTACTGTTATAGCGGCCGGTAA
LOC_Os11g33960
OsAffx.2735.1.S1_at--1067--2332Chr09:7399252..7399276 (25 bp)
AAAGAGACAGCACCTAGGCCATCTA
LOC_Os09g12860
OsAffx.2735.1.S1_at--921--533Chr11:19344529..19344552 (24 bp)
ATCGCCGCCGAATGGATTCCAATGA
LOC_Os11g33960
OsAffx.2735.1.S1_at--1137--1933Chr11:19344553..19344653 (25 bp)
ACGGCTGATCAGGTTTCTTTATGAA
LOC_Os11g33960
OsAffx.2735.1.S1_at--843--8193Chr11:19344680..19344704 (25 bp)
GGAAGATGTAGTGCCACCTGCTAAT
LOC_Os11g33960
OsAffx.2735.1.S1_at--546--5353Chr11:19344705..19344729 (25 bp)
GAAGATCTAATGTCTCCTGCGCATG
LOC_Os11g33960
OsAffx.2735.1.S1_at--128--3392Chr09:7398264..7398288 (25 bp)
CAGCGAACTGGTTCTTCTCATGCGG
LOC_Os09g12860
OsAffx.2735.1.S1_at--920--8973Chr11:19345527..19345551 (25 bp)
TGAACATCGGCTGCGAGGCGAACAA
LOC_Os11g33960
Target Sequence 
TACTGGAACTCATGGACGGATCGACAACCAAAAGGCAGAAAAAATCATGGCTGACTATACTGCAGTGACTAGCTCAGGAA
CTCAAGGAGATTCAGATGGCCATGAATTAGATCCAAAGGCACTTTATTCCATTTGCAATGGACTGCCACATGGACGCCTT
CCCATAGGCAATGGTGCTGTGTCCAAGTCTACTGTTATAGCGGCCGGTAAAGAGACAGCACCTAGGCCATCTACCCCATC
AGCCAATCAAACTTTGCGAAACGAAAATTTAAAACTCACACGCGAAAATGCAGAACATCGCCGCCGAATGGATTCCAATG
AACGGCTGATCAGGTTTCTTTATGAAAAGACAGGAGTGGAACCACCATCTGAGGAAGATGTAGTGCCACCTGCTAATGAA
GATCTAATGTCTCCTGCGCATGTCCAGCGAACTGGTTCTTCTCATGCGGGCTCACAGCAGGAAGCTGAGAATGATGGAAC
CACTGACACCAACATGGGCAGTGAGGAGAACGTGGTCTGTGAGGTGAACATCGGCTGCGAGGCGAACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2735.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis