Browse Element(s) Details


OsAffx.26046.1.S1_at

Description tigr:9632.m01496
TID=OsAffx.26046.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1664011/11hypothetical protein
LOC_Os12g163101/11Transposable element protein, putative, Retrotrans_gag
LOC_Os08g266501/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g249801/11hypothetical protein
LOC_Os04g214401/11Transposable element protein, putative, Retrotrans_gag, expressed
LOC_Os07g179801/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g16600NANA4+9005057..9014335retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g16620OsAffx.3805.1.S1_at11/114+9018915..9019628hypothetical protein
LOC_Os04g16630OsAffx.15648.1.S1_at1/114+9021492..9028512retrotransposon protein, putative, unclassified
LOC_Os04g16640OsAffx.26046.1.S1_at11/114+9031793..9032749hypothetical protein
LOC_Os04g16649OsAffx.31869.1.S1_at8/114+9039331..9040089retrotransposon protein, putative, unclassified
LOC_Os04g16649OsAffx.31869.5.S1_x_at2/114+9039331..9040089retrotransposon protein, putative, unclassified
LOC_Os04g16649OsAffx.31869.3.S1_x_at1/114+9039331..9040089retrotransposon protein, putative, unclassified
LOC_Os04g16649OsAffx.31869.3.S1_s_at1/114+9039331..9040089retrotransposon protein, putative, unclassified
LOC_Os04g16660NANA4+9043913..9044311retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g16670OsAffx.26047.1.S1_at11/114+9051867..9052495hypothetical protein
LOC_Os04g16680Os.12696.1.S1_at10/114+9054999..9057731Sedoheptulose-1,7-bisphosphatase, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26046.1.S1_at--1130--5851Chr04:9032677..9032701 (25 bp)
GAGCCACTTGCTTCATCGGAGCCGA
LOC_Os04g16640
OsAffx.26046.1.S1_at--1018--2538Chr08:16067715..16068138 (25 bp)
AACTAATCAGTATGGAGTCTGCATT
LOC_Os08g26650
OsAffx.26046.1.S1_at--498--6451Chr04:9032179..9032203 (25 bp)
GATCACATTCTGGAAAACACTTTCT
LOC_Os04g16640
OsAffx.26046.1.S1_at--46--2191Chr04:9032163..9032187 (25 bp)
ACACTTTCTTCATGGCACAATACAA
LOC_Os04g16640
OsAffx.26046.1.S1_at--430--4211Chr04:9032133..9032157 (25 bp)
CCCCATTGGAGGCATTTGTGTCTAA
LOC_Os04g16640
OsAffx.26046.1.S1_at--317--5871Chr04:9032101..9032125 (25 bp)
GAGCCTTCAACAGTCGAATCAGAAC
LOC_Os04g16640
OsAffx.26046.1.S1_at--51--5251Chr04:9032086..9032110 (25 bp)
GAATCAGAACCTGAACTTTCTAATT
LOC_Os04g16640
OsAffx.26046.1.S1_at--115--9751Chr04:9032066..9032090 (25 bp)
TAATTCAACTTATTCGACTGACGAA
LOC_Os04g16640
OsAffx.26046.1.S1_at--256--4091Chr04:9032033..9032057 (25 bp)
CGAGCCGTCATCCATTGCGAAAGAA
LOC_Os04g16640
OsAffx.26046.1.S1_at--450--191Chr04:9031932..9031956 (25 bp)
ATTTCAGTAAAAAGTGGCCGCTTGT
LOC_Os04g16640
OsAffx.26046.1.S1_at--1076--2311Chr04:9031922..9031946 (25 bp)
AAAGTGGCCGCTTGTTCCTTTGCCA
LOC_Os04g16640
Target Sequence 
GAGCCACTTGCTTCATCGGAGCCGATTTTTACAACTGGCTATGAAATTCGCTCCGAACTAATCAGTATGGAGTCTGCATT
TTATCTGGACATAACTGTCGGGGGATCATTCATGCATAAAACACCGTCAGAAGGAAAAGTAATTCTAGATCACATTCTGG
AAAACACTTTCTTCATGGCACAATACAATGAACCCCCATTGGAGGCATTTGTGTCTAAGATAAAGGAGCCTTCAACAGTC
GAATCAGAACCTGAACTTTCTAATTCAACTTATTCGACTGACGAAGTAGTTCCCGAGCCGTCATCCATTGCGAAAGAAGA
AATTCAGACTCCGGATCGTGCTCCAGTTCTATTCAGGGATGGCCTTGATGAAGATTACGGCGACACCCTGAATTATTTCA
GTAAAAAGTGGCCGCTTGTTCCTTTGCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26046.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis