Browse Element(s) Details


Os.12696.1.S1_at

Description gb:AK119209.1
DB_XREF= gi:37988832
TID=Os.12696.1
CNT=110
FEA=FLmRNA
TIER=FL+Stack
STK=20
UG=Os.12696 (NCBI UniGene Cluster)
UG_TITLE=(indica cultivar-group) sedoheptulose-1,7-bisphosphatase precursor, mRNA, complete cds; nuclear gene for chloroplast product
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-041-E03, full insert sequence.
FL= gb:AK119209.1 gb:AY188797.1 gb:AK062081.1 gb:AK065773.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1668010/11Sedoheptulose-1,7-bisphosphatase, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g16640OsAffx.26046.1.S1_at11/114+9031793..9032749hypothetical protein
LOC_Os04g16649OsAffx.31869.1.S1_at8/114+9039331..9040089retrotransposon protein, putative, unclassified
LOC_Os04g16649OsAffx.31869.5.S1_x_at2/114+9039331..9040089retrotransposon protein, putative, unclassified
LOC_Os04g16649OsAffx.31869.3.S1_x_at1/114+9039331..9040089retrotransposon protein, putative, unclassified
LOC_Os04g16649OsAffx.31869.3.S1_s_at1/114+9039331..9040089retrotransposon protein, putative, unclassified
LOC_Os04g16660NANA4+9043913..9044311retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g16670OsAffx.26047.1.S1_at11/114+9051867..9052495hypothetical protein
LOC_Os04g16680Os.12696.1.S1_at10/114+9054999..9057731Sedoheptulose-1,7-bisphosphatase, chloroplast precursor, putative, expressed
LOC_Os04g16690OsAffx.26048.1.S1_at11/114+9061173..9062040hypothetical protein
LOC_Os04g16700Os.45173.1.S1_x_at1/114+9064905..9066756retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g16710NANA4+9068679..9069332retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g16720OsAffx.32221.1.S1_s_at11/114+9081553..9085412ribosomal protein S15 containing protein
LOC_Os04g16720Os.26596.1.S1_s_at11/114+9081553..9085412ribosomal protein S15 containing protein
LOC_Os04g16720OsAffx.32220.1.S1_s_at11/114+9081553..9085412ribosomal protein S15 containing protein
LOC_Os04g16720OsAffx.32219.1.S1_x_at11/114+9081553..9085412ribosomal protein S15 containing protein
LOC_Os04g16720OsAffx.32241.1.S1_x_at10/114+9081553..9085412ribosomal protein S15 containing protein

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Gene Ontology Classification
GO idTypeName
GO:0005975biological_processcarbohydrate metabolism
GO:0005986biological_processsucrose biosynthesis
GO:0006000biological_processfructose metabolism
GO:0016051biological_processcarbohydrate biosynthesis
GO:0019252biological_processstarch biosynthesis
GO:0019253biological_processreductive pentose-phosphate cycle
GO:0042132molecular_functionfructose-bisphosphatase activity
GO:0042578molecular_functionphosphoric ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12696.1.S1_at--157--3591Chr04:9055997..9056021 (25 bp)
CATTTGATAATCCTGAATATGACAA
LOC_Os04g16680
Os.12696.1.S1_at--1038--2691Chr04:9055885..9055908 (24 bp)
AAGCTCATCAACTACTATGTCAAGG
LOC_Os04g16680
Os.12696.1.S1_at--391--8051Chr04:9055862..9055886 (25 bp)
GGAGAAGTACACATTGCGTTACACT
LOC_Os04g16680
Os.12696.1.S1_at--452--2191Chr04:9055854..9055878 (25 bp)
ACACATTGCGTTACACTGGAGGAAT
LOC_Os04g16680
Os.12696.1.S1_at--600--6191Chr04:9055836..9055860 (25 bp)
GAGGAATGGTTCCTGATGTCAACCA
LOC_Os04g16680
Os.12696.1.S1_at--506--6271NONE
GATGTCAACCAGATCATAGTTAAGG
NONE
Os.12696.1.S1_at--461--1611Chr04:9055484..9055508 (25 bp)
AGCTGAGGCTCCTGTTCGAGGTGGC
LOC_Os04g16680
Os.12696.1.S1_at--6--4571Chr04:9055461..9055485 (25 bp)
GCGCCGTTGGGTTTCTTGATAGAGA
LOC_Os04g16680
Os.12696.1.S1_at--280--5751Chr04:9055416..9055440 (25 bp)
GACGGCAAACAGTCGGTGCTGGACA
LOC_Os04g16680
Os.12696.1.S1_at--379--4531Chr04:9055269..9055293 (25 bp)
GCCGCCTAATCTTTTGCTGCAACGC
LOC_Os04g16680
Os.12696.1.S1_at--579--5831Chr04:9055102..9055126 (25 bp)
TCCCCTTTTGGTGTAAACAGTTGCA
LOC_Os04g16680
Target Sequence 
CATTTGATAATCCTGAATATGACAAGCTCATCAACTACTATGTCAAGGAGAAGTACACATTGCGTTACACTGGAGGAATG
GTTCCTGATGTCAACCAGATCATAGTTAAGGAGAAGGGCATCTTCACCAACGTGACGTCTCCGACAGCCAAGGCCAAGCT
GAGGCTCCTGTTCGAGGTGGCGCCGTTGGGTTTCTTGATAGAGAAAGCCGGCGGGTACAGCAGCGACGGCAAACAGTCGG
TGCTGGACAAGGTGATCAACAACCTCGACGAGCGGACTCAAGTGGCCTACGGTTCCAAGAACGAGATCATCCGGTTCGAG
GAGACTCTCTACGGCTCGTCGAGGCTCACCGCCGGCGCCACCGTGGGCGCCGCCGCCTAATCTTTTGCTGCAACGCGAGC
CCAGTGTCTCTGCAGGCCTCAAAAACGCTGAAACTGCAGTCGTTTTAGACTCCCATCCTGTAATGCAGATTGGGTTGTAG
TTGAAGTGGGACTTGAAACTGCAAAGTTATACTCCTTTTTGCAAGGTACCCGTTTTTTTCCCCTTTTGGTGTAAACAGTT
GCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12696.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis