Browse Element(s) Details


OsAffx.30422.1.S1_x_at

Description tigr:9638.m01314
TID=OsAffx.30422.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1523011/11hypothetical protein
LOC_Os09g029104/11hypothetical protein
LOC_Os08g189701/11Pectate lyase family protein
LOC_Os11g340001/11hypothetical protein
LOC_Os02g266141/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g15170NANA10+7714330..7717729retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g15180NANA10+7718976..7721846retrotransposon protein, putative, unclassified
LOC_Os10g15190NANA10+7722733..7723759hypothetical protein
LOC_Os10g15200NANA10+7727030..7727641retrotransposon, putative, centromere-specific
LOC_Os10g15210NANA10+7729358..7734672retrotransposon protein, putative, unclassified
LOC_Os10g15220OsAffx.30421.1.S1_s_at11/1110+7736492..7738270hypothetical protein
LOC_Os10g15230OsAffx.30422.1.S1_x_at11/1110+7741882..7743419hypothetical protein
LOC_Os10g15230OsAffx.30422.2.S1_x_at1/1110+7741882..7743419hypothetical protein
LOC_Os10g15240Os.46436.1.S1_at10/1110+7745906..7749861hypothetical protein
LOC_Os10g15250OsAffx.16111.1.S1_at1/1110+7750536..7757011retrotransposon protein, putative, unclassified
LOC_Os10g15250OsAffx.19776.1.S1_at1/1110+7750536..7757011retrotransposon protein, putative, unclassified
LOC_Os10g15250OsAffx.22699.1.S1_x_at1/1110+7750536..7757011retrotransposon protein, putative, unclassified
LOC_Os10g15260OsAffx.8332.1.S1_at10/1110+7761095..7762097hypothetical protein
LOC_Os10g15270NANA10+7763983..7767947retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0016829molecular_functionlyase activity
GO:0030570molecular_functionpectate lyase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30422.1.S1_x_at--602--8691Chr10:7743000..7743024 (25 bp)
TGTGCAGCCGATGCCAGGTGACCGT
LOC_Os10g15230
OsAffx.30422.1.S1_x_at--940--1671Chr10:7743005..7743029 (25 bp)
AGCCGATGCCAGGTGACCGTACTCC
LOC_Os10g15230
OsAffx.30422.1.S1_x_at--955--6351Chr10:7743009..7743033 (25 bp)
GATGCCAGGTGACCGTACTCCATCG
LOC_Os10g15230
OsAffx.30422.1.S1_x_at--925--7931Chr10:7743206..7743230 (25 bp)
GGATTACTTTGATGACACTACAAGA
LOC_Os10g15230
OsAffx.30422.1.S1_x_at--476--9891Chr10:7743210..7743234 (25 bp)
TACTTTGATGACACTACAAGAAATA
LOC_Os10g15230
OsAffx.30422.1.S1_x_at--785--55925Chr11:19370956..19371172 (25 bp)
GAAATATGACCTTCTGTGACAAATT
NONE
OsAffx.30422.1.S1_x_at--17--5852Chr10:7743236..7743260 (25 bp)
GACCTTCTGTGACAAATTCCTCGTG
LOC_Os10g15230
OsAffx.30422.1.S1_x_at--158--22513Chr12:9751270..9751293 (24 bp)
AAATTCCTCGTGACATCGGAGCTAT
NONE
OsAffx.30422.1.S1_x_at--178--56715Chr12:9751280..9751304 (25 bp)
GACATCGGAGCTATTCGTCATTAGC
NONE
OsAffx.30422.1.S1_x_at--349--9391Chr10:7743274..7743298 (25 bp)
TCGTCATTAGCACATTCAATTTTAT
LOC_Os10g15230
OsAffx.30422.1.S1_x_at--669--77518Chr11:18711557..18711576 (20 bp)
GGTGTTCGTCGTTAATACCAACTAG
NONE
Target Sequence 
TGTGCAGCCGATGCCAGGTGACCGTACTCCATCGGCTACAGGCAGCCACAATATCGAGGAAGAGGAACAACCAGCCGCTC
CTGCTATCCCAGTCTTAGCCGATCTGTTCTGTTTTGACATCAAGGATTACTTTGATGACACTACAAGAAATATGACCTTC
TGTGACAAATTCCTCGTGACATCGGAGCTATTCGTCATTAGCACATTCAATTTTATGACGATTAGTATGAGATGGGGTGC
CTTAGTGACGAAAAAAAGGTGTTCGTCGTTAATACCAACTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30422.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis