Browse Element(s) Details


OsAffx.8332.1.S1_at

Description tigr:9638.m01317
TID=OsAffx.8332.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1526010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g15220OsAffx.30421.1.S1_s_at11/1110+7736492..7738270hypothetical protein
LOC_Os10g15230OsAffx.30422.1.S1_x_at11/1110+7741882..7743419hypothetical protein
LOC_Os10g15230OsAffx.30422.2.S1_x_at1/1110+7741882..7743419hypothetical protein
LOC_Os10g15240Os.46436.1.S1_at10/1110+7745906..7749861hypothetical protein
LOC_Os10g15250OsAffx.16111.1.S1_at1/1110+7750536..7757011retrotransposon protein, putative, unclassified
LOC_Os10g15250OsAffx.19776.1.S1_at1/1110+7750536..7757011retrotransposon protein, putative, unclassified
LOC_Os10g15250OsAffx.22699.1.S1_x_at1/1110+7750536..7757011retrotransposon protein, putative, unclassified
LOC_Os10g15260OsAffx.8332.1.S1_at10/1110+7761095..7762097hypothetical protein
LOC_Os10g15270NANA10+7763983..7767947retrotransposon protein, putative, unclassified
LOC_Os10g15279OsAffx.27854.1.S1_at3/1110+7773567..7776622hypothetical protein
LOC_Os10g15279Os.9762.1.S1_at1/1110+7773567..7776622hypothetical protein
LOC_Os10g15290OsAffx.30423.1.S1_at11/1110+7777970..7778968hypothetical protein
LOC_Os10g15300Os.13717.1.S1_at11/1110+7782550..7783259expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8332.1.S1_at--464--9091Chr10:7762035..7762059 (25 bp)
TGCTCCTATTGAGTCAACAGCGGGT
LOC_Os10g15260
OsAffx.8332.1.S1_at--727--3271Chr10:7762021..7762045 (25 bp)
CAACAGCGGGTTACATCTCCTTGAA
LOC_Os10g15260
OsAffx.8332.1.S1_at--18--1631Chr10:7761979..7762003 (25 bp)
AGCTGGCCGGTATTGGCAATCGCAT
LOC_Os10g15260
OsAffx.8332.1.S1_at--678--9711Chr10:7761927..7761951 (25 bp)
TCAAGCGAGCCGATACACCGGTGGT
LOC_Os10g15260
OsAffx.8332.1.S1_at--324--6851Chr10:7761889..7761913 (25 bp)
GTTTCCAAGATCACCGCACACAGAT
LOC_Os10g15260
OsAffx.8332.1.S1_at--194--1311Chr10:7761868..7761892 (25 bp)
AGATGAACCTCGACTTCCTCAGGGA
LOC_Os10g15260
OsAffx.8332.1.S1_at--104--7211Chr10:7761831..7761855 (25 bp)
GTCGTACCTATCCTTCATCGAAATA
LOC_Os10g15260
OsAffx.8332.1.S1_at--674--10031Chr10:7761808..7761832 (25 bp)
TAGATCGACTCGCACAGTCTCTAGT
LOC_Os10g15260
OsAffx.8332.1.S1_at--985--1151Chr10:7761793..7761817 (25 bp)
AGTCTCTAGTGCCTTTAGCCGAGAA
LOC_Os10g15260
OsAffx.8332.1.S1_at--851--4471Chr10:7761780..7761800 (21 bp)
GCCGAGAAAGTTTTTGAGTCCCATC
LOC_Os10g15260
OsAffx.8332.1.S1_at--388--6111NONE
GAGTCCCATCTGACAAAGCCTTATC
NONE
Target Sequence 
TGCTCCTATTGAGTCAACAGCGGGTTACATCTCCTTGAAAAATGGGGCTTCTGCTCAGCTGGCCGGTATTGGCAATCGCA
TCGACAACAGCTTGAAGGGAGAACGTCGTCAAGCGAGCCGATACACCGGTGGTCACGTCCTCGCCTGTTTCCAAGATCAC
CGCACACAGATGAACCTCGACTTCCTCAGGGAAGGGTTTGGACGGTCGTACCTATCCTTCATCGAAATAGATCGACTCGC
ACAGTCTCTAGTGCCTTTAGCCGAGAAAGTTTTTGAGTCCCATCTGACAAAGCCTTATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8332.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis