Browse Element(s) Details


OsAffx.30421.1.S1_s_at

Description gb:NM_195545.1
DB_XREF= gi:37532449
TID=OsAffx.30421.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNAa0082N11.14), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1522011/11hypothetical protein
LOC_Os10g173001/11hypothetical protein
LOC_Os05g181001/11hypothetical protein
LOC_Os12g113101/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g15164Os.14497.1.S1_at11/1110+7709036..7713467expressed protein
LOC_Os10g15164Os.13728.1.S1_at5/1110+7709036..7713467expressed protein
LOC_Os10g15170NANA10+7714330..7717729retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g15180NANA10+7718976..7721846retrotransposon protein, putative, unclassified
LOC_Os10g15190NANA10+7722733..7723759hypothetical protein
LOC_Os10g15200NANA10+7727030..7727641retrotransposon, putative, centromere-specific
LOC_Os10g15210NANA10+7729358..7734672retrotransposon protein, putative, unclassified
LOC_Os10g15220OsAffx.30421.1.S1_s_at11/1110+7736492..7738270hypothetical protein
LOC_Os10g15230OsAffx.30422.1.S1_x_at11/1110+7741882..7743419hypothetical protein
LOC_Os10g15230OsAffx.30422.2.S1_x_at1/1110+7741882..7743419hypothetical protein
LOC_Os10g15240Os.46436.1.S1_at10/1110+7745906..7749861hypothetical protein
LOC_Os10g15250OsAffx.16111.1.S1_at1/1110+7750536..7757011retrotransposon protein, putative, unclassified
LOC_Os10g15250OsAffx.19776.1.S1_at1/1110+7750536..7757011retrotransposon protein, putative, unclassified
LOC_Os10g15250OsAffx.22699.1.S1_x_at1/1110+7750536..7757011retrotransposon protein, putative, unclassified
LOC_Os10g15260OsAffx.8332.1.S1_at10/1110+7761095..7762097hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30421.1.S1_s_at--100--1413Chr10:7737712..7737736 (25 bp)
AGACATCAACTCTGAAAATTTTGAC
LOC_Os10g15220
OsAffx.30421.1.S1_s_at--715--6871Chr10:7737886..7737910 (25 bp)
GTATTTTGCTGATAAGATTCAATGC
LOC_Os10g15220
OsAffx.30421.1.S1_s_at--350--9732Chr10:7737904..7737928 (25 bp)
TCAATGCAGAGGAGAGATCTCACCA
LOC_Os10g15220
OsAffx.30421.1.S1_s_at--1065--9431Chr10:7737943..7737967 (25 bp)
TCGGCTGTTAAATCTCCCAAGACCT
LOC_Os10g15220
OsAffx.30421.1.S1_s_at--974--8771Chr10:7737948..7737972 (25 bp)
TGTTAAATCTCCCAAGACCTTCTTT
LOC_Os10g15220
OsAffx.30421.1.S1_s_at--907--10451Chr10:7737950..7737974 (25 bp)
TTAAATCTCCCAAGACCTTCTTTGG
LOC_Os10g15220
OsAffx.30421.1.S1_s_at--283--2771Chr10:7737961..7737985 (25 bp)
AAGACCTTCTTTGGGCAGCATCGAT
LOC_Os10g15220
OsAffx.30421.1.S1_s_at--314--3551Chr10:7737979..7738003 (25 bp)
CATCGATAATATAGAGCTGGAAAGA
LOC_Os10g15220
OsAffx.30421.1.S1_s_at--265--5891Chr10:7737992..7738016 (25 bp)
GAGCTGGAAAGATTCAGTAGCAGAA
LOC_Os10g15220
OsAffx.30421.1.S1_s_at--117--731Chr10:7738079..7738103 (25 bp)
ATGATAGATTTGTTCCCAGATGTCG
LOC_Os10g15220
OsAffx.30421.1.S1_s_at--143--10051Chr10:7738083..7738107 (25 bp)
TAGATTTGTTCCCAGATGTCGTCCC
LOC_Os10g15220
Target Sequence 
AGACATCAACTCTGAAAATTTTGACAAATCTAGAGAAGTCTTCTTGGCTGCTATCAGTCCATGCATTCTTCCTGTTGGCA
TCCATCAAGGAAGAAACATACAAGTGTCATATGAGTTCTACCATCCAATGAGCTCGGCTAGGCAATTTGGGATGGGACAG
CTGCTAATCGGCTTGTATTTTGCTGATAAGATTCAATGCAGAGGAGAGATCTCACCAACACTGATGATGGATCGGCTGTT
AAATCTCCCAAGACCTTCTTTGGGCAGCATCGATAATATAGAGCTGGAAAGATTCAGTAGCAGAAACTTTGACAGATGGT
GGGGTGAATGGAAGCAACACATATTCCATCAGTCGGCTTCTATGTACATGATAGATTTGTTCCCAGATGTCGTCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30421.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis