Browse Element(s) Details


Os.14497.1.S1_at

Description gb:AK099670.1
DB_XREF= gi:32984879
TID=Os.14497.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14497 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013068G04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013068G04, full insert sequence.
FL= gb:AK099670.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1516411/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g15120NANA10+7685199..7685594hypothetical protein
LOC_Os10g15130OsAffx.22385.1.S1_x_at11/1110+7686171..7689131retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g15140NANA10+7690248..7690679hypothetical protein
LOC_Os10g15150OsAffx.18256.1.S1_at11/1110+7699177..7699977hypothetical protein
LOC_Os10g15160OsAffx.18257.1.S1_x_at11/1110+7704396..7704704serine/threonine protein kinase, putative
LOC_Os10g15164Os.14497.1.S1_at11/1110+7709036..7713467expressed protein
LOC_Os10g15164Os.13728.1.S1_at5/1110+7709036..7713467expressed protein
LOC_Os10g15170NANA10+7714330..7717729retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g15180NANA10+7718976..7721846retrotransposon protein, putative, unclassified
LOC_Os10g15190NANA10+7722733..7723759hypothetical protein
LOC_Os10g15200NANA10+7727030..7727641retrotransposon, putative, centromere-specific
LOC_Os10g15210NANA10+7729358..7734672retrotransposon protein, putative, unclassified
LOC_Os10g15220OsAffx.30421.1.S1_s_at11/1110+7736492..7738270hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14497.1.S1_at--346--6852Chr10:7710345..7710369 (25 bp)
GTTTCCTGCTTCCTATCTATGATAT
LOC_Os10g15164
Os.14497.1.S1_at--431--7112Chr10:7710279..7710303 (25 bp)
GTCACCATGGTGTTTTACAATGTCA
LOC_Os10g15164
Os.14497.1.S1_at--165--6271Chr10:7710252..7710271 (20 bp)
GATGTCCAAAAACGTCTCAGATTCA
LOC_Os10g15164
Os.14497.1.S1_at--974--2453Chr10:7709520..7709544 (25 bp)
AACACACTGTCGTGGTTCCATAGCG
LOC_Os10g15164
Os.14497.1.S1_at--982--2711Chr10:7709479..7709503 (25 bp)
AAGCAGCTTATGAAGCCACCCCTTG
LOC_Os10g15164
Os.14497.1.S1_at--328--4411Chr10:7709467..7709489 (23 bp)
GCCACCCCTTGTTTCATCAGAGGAA
LOC_Os10g15164
Os.14497.1.S1_at--458--2271Chr10:7709329..7709353 (25 bp)
AAATCCAGTCTTTACGCACGGACGT
LOC_Os10g15164
Os.14497.1.S1_at--61--9951Chr10:7709317..7709341 (25 bp)
TACGCACGGACGTTGGGTGTTCAGT
LOC_Os10g15164
Os.14497.1.S1_at--604--1213Chr10:7709146..7709170 (25 bp)
AGTTATAGTTTGTCCTTGTGTATGC
LOC_Os10g15164
Os.14497.1.S1_at--928--6911Chr10:7709127..7709151 (25 bp)
GTATGCTTATACTGCCATCAGCGAT
LOC_Os10g15164
Os.14497.1.S1_at--591--7491Chr10:7709059..7709083 (25 bp)
GTGGTGTGCGACTGTCTATTATCAA
LOC_Os10g15164
Target Sequence 
GTTTCCTGCTTCCTATCTATGATATTCAGATGCTGATTAAATCAGTTGTTTGGCAGGAATTATCAAGTCACCATGGTGTT
TTACAATGTCAAATGGCAGATGTCCAAAAACGTCTCAGATTCAGTTCCAGAATGAGACACAGTAACAGGTGACGGAACAC
ACTGTCGTGGTTCCATAGCGGTTGCGTGCAGAGGGCAAGCAGCTTATGAAGCCACCCCTTGTTTCATCAGAGGAACTAAC
NAAAGAAAATCCAGTCTTTACGCACGGACGTTGGGTGTTCAGTGAGCAGGGCGTTGCAGAGCTACCANNGCTACTTCAGC
ATGAAGAAGCAGTCAGCCAACAACATCGGCAGCAAGCATAGGCTGNNAAATGAGAATGTTAATCTAATTAAATCAAAAAA
TTAGTTCATGTTATGNCATTCATTTAGTGTAGTTATAGTTTGTCCTTGTGTATGCTTATACTGCCATCAGCGATCGGCCN
ATCTATGCCATTAGGATATGCATGTAAGAACTCAGAAGTGGTGTGCGACTGTCTATTATCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14497.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis