Browse Element(s) Details


OsAffx.30423.1.S1_at

Description tigr:9638.m01320
TID=OsAffx.30423.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1529011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g15250OsAffx.16111.1.S1_at1/1110+7750536..7757011retrotransposon protein, putative, unclassified
LOC_Os10g15250OsAffx.19776.1.S1_at1/1110+7750536..7757011retrotransposon protein, putative, unclassified
LOC_Os10g15250OsAffx.22699.1.S1_x_at1/1110+7750536..7757011retrotransposon protein, putative, unclassified
LOC_Os10g15260OsAffx.8332.1.S1_at10/1110+7761095..7762097hypothetical protein
LOC_Os10g15270NANA10+7763983..7767947retrotransposon protein, putative, unclassified
LOC_Os10g15279OsAffx.27854.1.S1_at3/1110+7773567..7776622hypothetical protein
LOC_Os10g15279Os.9762.1.S1_at1/1110+7773567..7776622hypothetical protein
LOC_Os10g15290OsAffx.30423.1.S1_at11/1110+7777970..7778968hypothetical protein
LOC_Os10g15300Os.13717.1.S1_at11/1110+7782550..7783259expressed protein
LOC_Os10g15310Os.11953.1.S1_at8/1110+7788439..7790310hypothetical protein
LOC_Os10g15310OsAffx.24767.1.S1_x_at1/1110+7788439..7790310hypothetical protein
LOC_Os10g15320OsAffx.18258.1.S1_at11/1110+7791909..7792637hypothetical protein
LOC_Os10g15330OsAffx.30424.1.S1_s_at11/1110+7795015..7796476hypothetical protein
LOC_Os10g15340OsAffx.32166.4.S1_at11/1110+7800997..7804746retrotransposon protein, putative, unclassified, expressed
LOC_Os10g15340Os.36736.1.S1_x_at1/1110+7800997..7804746retrotransposon protein, putative, unclassified, expressed
LOC_Os10g15340OsAffx.18435.1.S1_x_at1/1110+7800997..7804746retrotransposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30423.1.S1_at--1012--4091Chr10:7778845..7778869 (25 bp)
CGCCCCGAATTCATACACATGGTTA
LOC_Os10g15290
OsAffx.30423.1.S1_at--679--5551Chr10:7778816..7778840 (25 bp)
GAAACCTTTCTTTGGTCTTCACCAG
LOC_Os10g15290
OsAffx.30423.1.S1_at--722--9532Chr10:7778801..7778825 (25 bp)
TCTTCACCAGGAAAATCCCTACCAT
LOC_Os10g15290
OsAffx.30423.1.S1_at--581--391Chr10:7778778..7778802 (25 bp)
ATCACCTGTGGGAGTTTGAGCTGCT
LOC_Os10g15290
OsAffx.30423.1.S1_at--976--8911Chr10:7778762..7778786 (25 bp)
TGAGCTGCTGTGCTCATGCCTTAAG
LOC_Os10g15290
OsAffx.30423.1.S1_at--496--6571Chr10:7778738..7778762 (25 bp)
GATTCGAGGCATGTCACAAGGAACT
LOC_Os10g15290
OsAffx.30423.1.S1_at--582--2812Chr10:7778704..7778728 (25 bp)
AAGTTGTTTTCGTTCTCTCTTGAAG
LOC_Os10g15290
OsAffx.30423.1.S1_at--907--5631Chr10:7778225..7778246 (22 bp)
GACAGTTTCGGCTAAGGAATCCTCT
LOC_Os10g15290
OsAffx.30423.1.S1_at--140--6351Chr10:7778157..7778181 (25 bp)
GATGCGCTCTAGACTCCAGGGATGA
LOC_Os10g15290
OsAffx.30423.1.S1_at--573--1991Chr10:7778145..7778169 (25 bp)
ACTCCAGGGATGATCTTCGGAACGA
LOC_Os10g15290
OsAffx.30423.1.S1_at--1065--5931Chr10:7778116..7778140 (25 bp)
GAGAATTCCTTGACAGACTTCCCTC
LOC_Os10g15290
Target Sequence 
CGCCCCGAATTCATACACATGGTTAGGGAGAAACCTTTCTTTGGTCTTCACCAGGAAAATCCCTACCATCACCTGTGGGA
GTTTGAGCTGCTGTGCTCATGCCTTAAGATTCGAGGCATGTCACAAGGAACTATACGGTGGAAGTTGTTTTCGTTCTCTC
TTGAAGAGAGAGCAAAGCAATTGTACACATCTATCGTCGGGTGTGTAAACGGTGACTGGAAAGATTGCGGGACAGTTTCG
GCTAAGGAATCCTCTCCCGAGCCATCAGGACCGAAGAACGAAGAATTTCGAACTTCAGGATGCGCTCTAGACTCCAGGGA
TGATCTTCGGAACGATCATGAGAATTCCTTGACAGACTTCCCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30423.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis