Browse Element(s) Details


OsAffx.30424.1.S1_s_at

Description gb:NM_195556.1
DB_XREF= gi:37532471
TID=OsAffx.30424.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBb0047B19.19), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1533011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g15279OsAffx.27854.1.S1_at3/1110+7773567..7776622hypothetical protein
LOC_Os10g15279Os.9762.1.S1_at1/1110+7773567..7776622hypothetical protein
LOC_Os10g15290OsAffx.30423.1.S1_at11/1110+7777970..7778968hypothetical protein
LOC_Os10g15300Os.13717.1.S1_at11/1110+7782550..7783259expressed protein
LOC_Os10g15310Os.11953.1.S1_at8/1110+7788439..7790310hypothetical protein
LOC_Os10g15310OsAffx.24767.1.S1_x_at1/1110+7788439..7790310hypothetical protein
LOC_Os10g15320OsAffx.18258.1.S1_at11/1110+7791909..7792637hypothetical protein
LOC_Os10g15330OsAffx.30424.1.S1_s_at11/1110+7795015..7796476hypothetical protein
LOC_Os10g15340OsAffx.32166.4.S1_at11/1110+7800997..7804746retrotransposon protein, putative, unclassified, expressed
LOC_Os10g15340Os.36736.1.S1_x_at1/1110+7800997..7804746retrotransposon protein, putative, unclassified, expressed
LOC_Os10g15340OsAffx.18435.1.S1_x_at1/1110+7800997..7804746retrotransposon protein, putative, unclassified, expressed
LOC_Os10g15360OsAffx.24744.4.A1_at11/1110+7819182..7819625retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30424.1.S1_s_at--347--2671Chr10:7795672..7795693 (22 bp)
AAGCCCTGTGAAAATCCATCTGTCG
LOC_Os10g15330
OsAffx.30424.1.S1_s_at--805--3051Chr10:7795922..7795946 (25 bp)
AATCGGGTGAGCAGACTCCATCGAC
LOC_Os10g15330
OsAffx.30424.1.S1_s_at--82--531Chr10:7795941..7795965 (25 bp)
ATCGACCGGCCATGATCTAGATGTA
LOC_Os10g15330
OsAffx.30424.1.S1_s_at--1149--8751Chr10:7795962..7795986 (25 bp)
TGTAGGGTTGCCAGAACAGCCGAAC
LOC_Os10g15330
OsAffx.30424.1.S1_s_at--1145--6811Chr10:7796073..7796097 (25 bp)
GTTTAGCCGATATGCTCTCGTTTGA
LOC_Os10g15330
OsAffx.30424.1.S1_s_at--1026--9531Chr10:7796146..7796170 (25 bp)
TCTAGCCCTCCTCAATGATGATGTT
LOC_Os10g15330
OsAffx.30424.1.S1_s_at--1081--5051Chr10:7796205..7796229 (25 bp)
GCAGCTCTTTAGACTCCTTAGTGGA
LOC_Os10g15330
OsAffx.30424.1.S1_s_at--612--10431Chr10:7796222..7796246 (25 bp)
TTAGTGGATAACTGCGGGCCGATCA
LOC_Os10g15330
OsAffx.30424.1.S1_s_at--1081--1291Chr10:7796281..7796305 (25 bp)
AGATGCTTATGCCAATGCCATTTCC
LOC_Os10g15330
OsAffx.30424.1.S1_s_at--1081--4431Chr10:7796297..7796321 (25 bp)
GCCATTTCCCCAGTGGTGTATTTAG
LOC_Os10g15330
OsAffx.30424.1.S1_s_at--600--1651Chr10:7796404..7796428 (25 bp)
AGCGAATCGGCTATCCATCAAAGGG
LOC_Os10g15330
Target Sequence 
AAGCCCTGTGAAAATCCATCTGTCGCCTCGTTCTCCGTCTCCTTCTCGGCAAGAATCGGGTGAGCAGACTCCATCGACCG
GCCATGATCTAGATGTAGGGTTGCCAGAACAGCCGAACCTTGCTGCACCGGGTTTAGCCGATATGCTCTCGTTTGACATC
AATCAGTTCATGGACGAAGAAGGGGAGGAAATCACTAGTAAAGTTCTAGCCCTCCTCAATGATGATGTTAGGGGGAAGCT
TGTGGAGATCGCTGATCGGCTGGGCAGCTCTTTAGACTCCTTAGTGGATAACTGCGGGCCGATCAGAGATAGGTTTGAAG
AAATCCAGCGTCAGATTCTAGATGCTTATGCCAATGCCATTTCCCCAGTGGTGTATTTAGAGCAGCATCGGCTTAAACTG
GAGAGGGCGATGCAGCAGATTGCTGACAGACGTCAGAGAGCTGAGTTGGAGACCACGATTCAAGCGAATCGGCTATCCAT
CAAAGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30424.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis