Browse Element(s) Details


OsAffx.18258.1.S1_at

Description tigr:9638.m01323
TID=OsAffx.18258.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1532011/11hypothetical protein
LOC_Os03g432001/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g15270NANA10+7763983..7767947retrotransposon protein, putative, unclassified
LOC_Os10g15279OsAffx.27854.1.S1_at3/1110+7773567..7776622hypothetical protein
LOC_Os10g15279Os.9762.1.S1_at1/1110+7773567..7776622hypothetical protein
LOC_Os10g15290OsAffx.30423.1.S1_at11/1110+7777970..7778968hypothetical protein
LOC_Os10g15300Os.13717.1.S1_at11/1110+7782550..7783259expressed protein
LOC_Os10g15310Os.11953.1.S1_at8/1110+7788439..7790310hypothetical protein
LOC_Os10g15310OsAffx.24767.1.S1_x_at1/1110+7788439..7790310hypothetical protein
LOC_Os10g15320OsAffx.18258.1.S1_at11/1110+7791909..7792637hypothetical protein
LOC_Os10g15330OsAffx.30424.1.S1_s_at11/1110+7795015..7796476hypothetical protein
LOC_Os10g15340OsAffx.32166.4.S1_at11/1110+7800997..7804746retrotransposon protein, putative, unclassified, expressed
LOC_Os10g15340Os.36736.1.S1_x_at1/1110+7800997..7804746retrotransposon protein, putative, unclassified, expressed
LOC_Os10g15340OsAffx.18435.1.S1_x_at1/1110+7800997..7804746retrotransposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18258.1.S1_at--13--1031Chr10:7792435..7792459 (25 bp)
AGGTGGTTCCCAATAGTGATTCGGA
LOC_Os10g15320
OsAffx.18258.1.S1_at--527--3252Chr03:24046973..24046997 (25 bp)
CAACTTTTCTCCCTAATGGTGTGTT
LOC_Os03g43200
OsAffx.18258.1.S1_at--1081--8151Chr10:7792126..7792150 (25 bp)
GGAAACAACAGCCTGTCTCTGGTAT
LOC_Os10g15320
OsAffx.18258.1.S1_at--1012--371Chr10:7792080..7792104 (25 bp)
ATCAACATCGGCTTTTGCAAGTCAA
LOC_Os10g15320
OsAffx.18258.1.S1_at--982--10731Chr10:7792066..7792090 (25 bp)
TTGCAAGTCAACAGCCGATGGCATC
LOC_Os10g15320
OsAffx.18258.1.S1_at--176--8291Chr10:7792047..7792071 (25 bp)
GGCATCAACATCAGCTTTTGCAAGC
LOC_Os10g15320
OsAffx.18258.1.S1_at--770--10731Chr10:7792030..7792054 (25 bp)
TTGCAAGCTCAGGACAGCCAGGATT
LOC_Os10g15320
OsAffx.18258.1.S1_at--447--111Chr10:7792008..7792032 (25 bp)
ATTCAAACCCCGTGTACTGATCAGA
LOC_Os10g15320
OsAffx.18258.1.S1_at--562--8751Chr10:7791996..7792020 (25 bp)
TGTACTGATCAGACCACAACCTCAA
LOC_Os10g15320
OsAffx.18258.1.S1_at--982--5211Chr10:7791960..7791984 (25 bp)
GAATATACCTCTAGTAACCCCAGAA
LOC_Os10g15320
OsAffx.18258.1.S1_at--649--7051Chr10:7791947..7791971 (25 bp)
GTAACCCCAGAACAGATTGCTGCTA
LOC_Os10g15320
Target Sequence 
AGGTGGTTCCCAATAGTGATTCGGAATCAAGCACATCTAAAGATGGTAAGGCCAAAGGTGATAAAGCTAAGGATGATGAA
CCTGGAGATGACAAGTCAGAAGGAGAAGACTCTCAAGAGATCAAGAATTTGCAAGATCAGATTGACTATGCTGTTCATCA
TGCTTTGATCAACCAATCAGGGGTGCTTGTCAATACCTTGACTAATATGATCAAGTCTGTGGTTGATGGTACAATTGCTG
AGCATCAAGCTAAAGGACCAACTTTTCTCCCTAATGGTGTGTTTCCACAATATAGGGATCTGGTAACTGGGAAACAACAG
CCTGTCTCTGGTATCAATCCAGAACAGCCGATAGCATCAACATCGGCTTTTGCAAGTCAACAGCCGATGGCATCAACATC
AGCTTTTGCAAGCTCAGGACAGCCAGGATTCAAACCCCGTGTACTGATCAGACCACAACCTCAACACATGGGGCAGAATA
TACCTCTAGTAACCCCAGAACAGATTGCTGCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18258.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis