Browse Element(s) Details


OsAffx.28898.1.S1_at

Description tigr:9635.m04440
TID=OsAffx.28898.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4422011/11hypothetical protein
LOC_Os11g474462/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g44190Os.13464.1.S1_at11/117+26405007..26407105H/ACA ribonucleoprotein complex subunit 4, putative, expressed
LOC_Os07g44200Os.52622.1.S1_at11/117+26411195..26412764DNA-binding storekeeper protein, putative, expressed
LOC_Os07g44210Os.23232.1.S1_at11/117+26415275..26427637SNF2 domain-containing protein, putative, expressed
LOC_Os07g44210OsAffx.6305.1.S1_at2/117+26415275..26427637SNF2 domain-containing protein, putative, expressed
LOC_Os07g44210OsAffx.15286.1.S1_at2/117+26415275..26427637SNF2 domain-containing protein, putative, expressed
LOC_Os07g44220OsAffx.28898.1.S1_at11/117+26429266..26429583hypothetical protein
LOC_Os07g44230Os.53888.1.S1_at11/117+26431006..26433562ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein, putative, expressed
LOC_Os07g44240Os.14919.1.S1_at4/117+26437563..26441785transposon protein, putative, Mutator sub-class
LOC_Os07g44240OsAffx.29313.1.S1_at1/117+26437563..26441785transposon protein, putative, Mutator sub-class
LOC_Os07g44240Os.56216.1.S1_at1/117+26437563..26441785transposon protein, putative, Mutator sub-class
LOC_Os07g44250Os.12381.1.S1_s_at11/117+26443941..26444820Dirigent-like protein, expressed
LOC_Os07g44250Os.12381.1.S1_x_at11/117+26443941..26444820Dirigent-like protein, expressed
LOC_Os07g44250Os.43269.1.S1_x_at7/117+26443941..26444820Dirigent-like protein, expressed
LOC_Os07g44260OsAffx.5632.1.S1_x_at1/117+26448311..26448775Dirigent-like protein
LOC_Os07g44260OsAffx.5632.1.S1_at1/117+26448311..26448775Dirigent-like protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28898.1.S1_at--66--3391Chr07:26429522..26429546 (25 bp)
CAGAGAGGAAGGGAAACGCCGCCGG
LOC_Os07g44220
OsAffx.28898.1.S1_at--880--6111Chr07:26429458..26429482 (25 bp)
GATGGGAAGGCTGTTAACAGCGAAA
LOC_Os07g44220
OsAffx.28898.1.S1_at--1036--9793Chr07:26429444..26429468 (25 bp)
TAACAGCGAAATTTGGTAAAGCCCA
LOC_Os07g44220
OsAffx.28898.1.S1_at--1155--3935Chr11:21985608..21985632 (25 bp)
CGGCTTAGAGTTAATATCGGCTGGA
NONE
OsAffx.28898.1.S1_at--662--10034Chr11:21985613..21985637 (25 bp)
TAGAGTTAATATCGGCTGGAATCAG
NONE
OsAffx.28898.1.S1_at--209--412Chr06:8092624..8092647 (24 bp)
ATCAGTCGATGGGAGTCGTCAAATT
NONE
OsAffx.28898.1.S1_at--33--811Chr07:26429359..26429383 (25 bp)
ATGGGAGTCGTCAAATTGCCACGAT
LOC_Os07g44220
OsAffx.28898.1.S1_at--94--3172Chr05:26649313..26649479 (25 bp)
AATTGCCACGATGTTGTGTTCTCGA
NONE
OsAffx.28898.1.S1_at--397--4411Chr07:26429342..26429366 (25 bp)
GCCACGATGTTGTGTTCTCGATGGA
LOC_Os07g44220
OsAffx.28898.1.S1_at--676--6273Chr06:5908473..5908844 (25 bp)
GATGTTGTGTTCTCGATGGAATCGG
NONE
OsAffx.28898.1.S1_at--212--6732Chr08:5519652..5519673 (22 bp)
GTTCTCGATGGAATCGGATCAATCA
NONE
Target Sequence 
CAGAGAGGAAGGGAAACGCCGCCGGGGGCGGAAAGGAGAAGGCGACGGCGTGGGACTCGGGGTGGATGGGAAGGCTGTTA
ACAGCGAAATTTGGTAAAGCCCAAAGTCATCATCGGCTTAGAGTTAATATCGGCTGGAATCAGCCGATTGGGGGAATCAG
TCGATGGGAGTCGTCAAATTGCCACGATGTTGTGTTCTCGATGGAATCGGATCAATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28898.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis