Browse Element(s) Details


Os.12381.1.S1_x_at

Description gb:AK106022.1
DB_XREF= gi:32991231
TID=Os.12381.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.12381 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-206-C04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-206-C04, full insert sequence.
FL= gb:AK106022.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4425011/11Dirigent-like protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g44210Os.23232.1.S1_at11/117+26415275..26427637SNF2 domain-containing protein, putative, expressed
LOC_Os07g44210OsAffx.6305.1.S1_at2/117+26415275..26427637SNF2 domain-containing protein, putative, expressed
LOC_Os07g44210OsAffx.15286.1.S1_at2/117+26415275..26427637SNF2 domain-containing protein, putative, expressed
LOC_Os07g44220OsAffx.28898.1.S1_at11/117+26429266..26429583hypothetical protein
LOC_Os07g44230Os.53888.1.S1_at11/117+26431006..26433562ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein, putative, expressed
LOC_Os07g44240Os.14919.1.S1_at4/117+26437563..26441785transposon protein, putative, Mutator sub-class
LOC_Os07g44240OsAffx.29313.1.S1_at1/117+26437563..26441785transposon protein, putative, Mutator sub-class
LOC_Os07g44240Os.56216.1.S1_at1/117+26437563..26441785transposon protein, putative, Mutator sub-class
LOC_Os07g44250Os.12381.1.S1_s_at11/117+26443941..26444820Dirigent-like protein, expressed
LOC_Os07g44250Os.12381.1.S1_x_at11/117+26443941..26444820Dirigent-like protein, expressed
LOC_Os07g44250Os.43269.1.S1_x_at7/117+26443941..26444820Dirigent-like protein, expressed
LOC_Os07g44260OsAffx.5632.1.S1_x_at1/117+26448311..26448775Dirigent-like protein
LOC_Os07g44260OsAffx.5632.1.S1_at1/117+26448311..26448775Dirigent-like protein
LOC_Os07g44280OsAffx.16709.2.S1_s_at11/117+26455105..26455854Dirigent-like protein, expressed
LOC_Os07g44300Os.54134.1.S1_at11/117+26462481..26469038pentatricopeptide, putative, expressed
LOC_Os07g44290Os.26927.1.S1_at10/117+26462749..26467163CBL-interacting serine/threonine-protein kinase 1, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009807biological_processlignan biosynthesis
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12381.1.S1_x_at--936--3011Chr07:26444116..26444140 (25 bp)
AATGCTACGTCGTCTGATTACGTTG
LOC_Os07g44250
Os.12381.1.S1_x_at--658--4851Chr07:26444113..26444137 (25 bp)
GCTACGTCGTCTGATTACGTTGCTC
LOC_Os07g44250
Os.12381.1.S1_x_at--283--3731Chr07:26444112..26444136 (25 bp)
CTACGTCGTCTGATTACGTTGCTCT
LOC_Os07g44250
Os.12381.1.S1_x_at--1154--351Chr07:26444061..26444085 (25 bp)
ATAATACTGCTATACACGGTGTGAT
LOC_Os07g44250
Os.12381.1.S1_x_at--696--611Chr07:26444038..26444062 (25 bp)
ATGCGTGATTTATTTCCATCGCGAA
LOC_Os07g44250
Os.12381.1.S1_x_at--745--10672Chr07:26444025..26444049 (25 bp)
TTCCATCGCGAAATATACTTGTTTG
LOC_Os07g44250
Os.12381.1.S1_x_at--397--5591Chr07:26444016..26444040 (25 bp)
GAAATATACTTGTTTGCTTGACGAG
LOC_Os07g44250
Os.12381.1.S1_x_at--691--10271Chr07:26444004..26444028 (25 bp)
TTTGCTTGACGAGTTATATGCACCG
LOC_Os07g44250
Os.12381.1.S1_x_at--273--5291Chr07:26443977..26444001 (25 bp)
GAATGTGCAAAATGTATCCCAACTT
LOC_Os07g44250
Os.12381.1.S1_x_at--936--9311Chr07:26443961..26443985 (25 bp)
TCCCAACTTTGTTTATTTTCATTCA
LOC_Os07g44250
Os.12381.1.S1_x_at--387--3271Chr07:26443958..26443982 (25 bp)
CAACTTTGTTTATTTTCATTCAATA
LOC_Os07g44250
Target Sequence 
AATGCTACGTCGTCTGATTACGTTGCTCTGAATTCTGATAGATGGTAATTAACATATAATACTGCTATACACGGTGTGAT
GCGTGATTTATTTCCATCGCGAAATATACTTGTTTGCTTGACGAGTTATATGCACCGNTGAATGTGCAAAATGTATCCCA
ACTTTGTTTATTTTCATTCAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12381.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis