Browse Element(s) Details


Os.54134.1.S1_at

Description gb:AK102097.1
DB_XREF= gi:32987306
TID=Os.54134.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54134 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033083H24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033083H24, full insert sequence.
FL= gb:AK102097.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4430011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g44240Os.14919.1.S1_at4/117+26437563..26441785transposon protein, putative, Mutator sub-class
LOC_Os07g44240OsAffx.29313.1.S1_at1/117+26437563..26441785transposon protein, putative, Mutator sub-class
LOC_Os07g44240Os.56216.1.S1_at1/117+26437563..26441785transposon protein, putative, Mutator sub-class
LOC_Os07g44250Os.12381.1.S1_s_at11/117+26443941..26444820Dirigent-like protein, expressed
LOC_Os07g44250Os.12381.1.S1_x_at11/117+26443941..26444820Dirigent-like protein, expressed
LOC_Os07g44250Os.43269.1.S1_x_at7/117+26443941..26444820Dirigent-like protein, expressed
LOC_Os07g44260OsAffx.5632.1.S1_x_at1/117+26448311..26448775Dirigent-like protein
LOC_Os07g44260OsAffx.5632.1.S1_at1/117+26448311..26448775Dirigent-like protein
LOC_Os07g44280OsAffx.16709.2.S1_s_at11/117+26455105..26455854Dirigent-like protein, expressed
LOC_Os07g44300Os.54134.1.S1_at11/117+26462481..26469038pentatricopeptide, putative, expressed
LOC_Os07g44290Os.26927.1.S1_at10/117+26462749..26467163CBL-interacting serine/threonine-protein kinase 1, putative, expressed
LOC_Os07g44310OsAffx.5631.1.S1_at11/117+26469881..26471425DnaJ domain containing protein, expressed
LOC_Os07g44310Os.57202.1.S1_at10/117+26469881..26471425DnaJ domain containing protein, expressed
LOC_Os07g44320Os.27473.1.S1_at11/117+26472527..26476633expressed protein
LOC_Os07g44330Os.2914.1.S1_at11/117+26479551..26483613ATPase, histidine kinase, DNA gyrase B-, and HSP90-like domain containing protein, expressed
LOC_Os07g44340NANA7+26490730..26493859retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54134.1.S1_at--301--2131Chr07:26463048..26463072 (25 bp)
ACAGGAACCCGGATGAGCAATCAAT
LOC_Os07g44300
Os.54134.1.S1_at--1053--7871Chr07:26463020..26463044 (25 bp)
GGTTAATTCACCTGTTCGTCGATCT
LOC_Os07g44300
Os.54134.1.S1_at--482--1771Chr07:26463011..26463035 (25 bp)
ACCTGTTCGTCGATCTTCATGGCGA
LOC_Os07g44300
Os.54134.1.S1_at--1138--10331Chr07:26462699..26462723 (25 bp)
TTTATTGGGAGTTGCCGAATGGCGA
LOC_Os07g44300
Os.54134.1.S1_at--581--4071Chr07:26462684..26462708 (25 bp)
CGAATGGCGACTCTTCCCGTTGCAG
LOC_Os07g44300
Os.54134.1.S1_at--1087--5791Chr07:26462655..26462679 (25 bp)
GACCGGGTCGGTGACCGGATTCATA
LOC_Os07g44300
Os.54134.1.S1_at--603--1771Chr07:26462642..26462666 (25 bp)
ACCGGATTCATACTTGTCTTTTGCA
LOC_Os07g44300
Os.54134.1.S1_at--470--7151Chr07:26462627..26462651 (25 bp)
GTCTTTTGCATTCCTTTCTCTTTTT
LOC_Os07g44300
Os.54134.1.S1_at--1124--971Chr07:26462562..26462586 (25 bp)
AGGAGTATGTCTTTTGCTTTCGTAT
LOC_Os07g44300
Os.54134.1.S1_at--400--7151Chr07:26462554..26462578 (25 bp)
GTCTTTTGCTTTCGTATGCGTGTTT
LOC_Os07g44300
Os.54134.1.S1_at--516--612Chr07:26462539..26462563 (25 bp)
ATGCGTGTTTGAGCTGGATTTTTCA
LOC_Os07g44300
Target Sequence 
ACAGGAACCCGGATGAGCAATCAATCAAGGTTAATTCACCTGTTCGTCGATCTTCATGGCGAGGATGCGTTGGCGGTCGA
GGATCTTGATGGCGAAGGCGGCGCCGGTGTCGGCGTGGCGCGCCAGCTTCACCTTGCCGAAGTGCCCCTCTCCCAGCGCC
CGCCCCATCTCGTACTTCCCCATCCGCATTGCCGGCGCCCGCCGCGGATGGGAGGGCCGCCGTCTCCGGCGCGCGCGCGC
GCGGTGGCGGAGTTCGACACTCGCGAGAGGAGAGGAGAAGAGAAGGTTTGGTGGCGGCTTTGGGGGGAGTTGGAGGAAGG
GCGTGAGACTTTGGGAATTCGGCTGGGTTTTTATTGGGAGTTGCCGAATGGCGACTCTTCCCGTTGCAGCCGCGACCGGG
TCGGTGACCGGATTCATACTTGTCTTTTGCATTCCTTTCTCTTTTTTTTTTTGAAAGTTTTTTTTTTAATTTTTGTTGCT
GTTGTGTAGGAGTATGTCTTTTGCTTTCGTATGCGTGTTTGAGCTGGATTTTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54134.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis