Browse Element(s) Details


Os.27473.1.S1_at

Description gb:AK062060.1
DB_XREF= gi:32972078
TID=Os.27473.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.27473 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023127O12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-044-C09, full insert sequence.
FL= gb:AK072575.1 gb:AK062060.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4432011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g44260OsAffx.5632.1.S1_x_at1/117+26448311..26448775Dirigent-like protein
LOC_Os07g44260OsAffx.5632.1.S1_at1/117+26448311..26448775Dirigent-like protein
LOC_Os07g44280OsAffx.16709.2.S1_s_at11/117+26455105..26455854Dirigent-like protein, expressed
LOC_Os07g44300Os.54134.1.S1_at11/117+26462481..26469038pentatricopeptide, putative, expressed
LOC_Os07g44290Os.26927.1.S1_at10/117+26462749..26467163CBL-interacting serine/threonine-protein kinase 1, putative, expressed
LOC_Os07g44310OsAffx.5631.1.S1_at11/117+26469881..26471425DnaJ domain containing protein, expressed
LOC_Os07g44310Os.57202.1.S1_at10/117+26469881..26471425DnaJ domain containing protein, expressed
LOC_Os07g44320Os.27473.1.S1_at11/117+26472527..26476633expressed protein
LOC_Os07g44330Os.2914.1.S1_at11/117+26479551..26483613ATPase, histidine kinase, DNA gyrase B-, and HSP90-like domain containing protein, expressed
LOC_Os07g44340NANA7+26490730..26493859retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g44350Os.7186.1.S1_at11/117+26499770..26502532Novel plant SNARE 11, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27473.1.S1_at--388--2071Chr07:26473031..26473055 (25 bp)
ACTTGGGATCAAACTGTCACTGGTT
LOC_Os07g44320
Os.27473.1.S1_at--965--8551Chr07:26473011..26473035 (25 bp)
TGGTTTTTCTTCCAGTACTCCAGGA
LOC_Os07g44320
Os.27473.1.S1_at--814--1131Chr07:26472951..26472975 (25 bp)
AGTCCAGTGGTTCTTCAATCAGCAA
LOC_Os07g44320
Os.27473.1.S1_at--1017--3251Chr07:26472913..26472937 (25 bp)
CAACGATCTTTTGTTCAGGCAGTAT
LOC_Os07g44320
Os.27473.1.S1_at--768--8531Chr07:26472775..26472799 (25 bp)
TGGAGTACCGAAGTTGAAGCCCCTT
LOC_Os07g44320
Os.27473.1.S1_at--1147--5391Chr07:26472760..26472784 (25 bp)
GAAGCCCCTTCGTCTTAACACGAAT
LOC_Os07g44320
Os.27473.1.S1_at--589--1351Chr07:26472707..26472731 (25 bp)
AGAGATCCTTTGCTGTCCATTTAAT
LOC_Os07g44320
Os.27473.1.S1_at--162--3211Chr07:26472682..26472706 (25 bp)
CAATGTGTCTGAGTCTTCGAGTGGA
LOC_Os07g44320
Os.27473.1.S1_at--1020--3831Chr07:26472644..26472668 (25 bp)
CTGCTATGGCTTGTGGTACATGTCA
LOC_Os07g44320
Os.27473.1.S1_at--743--4891Chr07:26472596..26472620 (25 bp)
GCTTAGAGCTGCCTTGGTAACCTTG
LOC_Os07g44320
Os.27473.1.S1_at--1081--7051Chr07:26472580..26472604 (25 bp)
GTAACCTTGCCAGCGTGCCATGGAA
LOC_Os07g44320
Target Sequence 
ACTTGGGATCAAACTGTCACTGGTTTTTCTTCCAGTACTCCAGGAACAGCATAGGTGGTGGTTAATGGTATGATAAGGAT
AGTCCAGTGGTTCTTCAATCAGCAAAATGGATACAGAACAACGATCTTTTGTTCAGGCAGTATAATAGTGCCTGATATTG
GGAGGTTATGATCTGCTCAAAATATTATTGTCTATTTTGTGGAAATCTGCCATAGTGGCACCAGAATATGCTAACTATTC
AAGCTGTTCAGTTCAATGGAGTACCGAAGTTGAAGCCCCTTCGTCTTAACACGAATGGATCGATGAATGAACCATGTGAT
GTTCAGAGATCCTTTGCTGTCCATTTAATCAATGTGTCTGAGTCTTCGAGTGGATACAAAGCTACCCCTGCTATGGCTTG
TGGTACATGTCAATATTGTCAGTAATGCATTAGAGGCTTAGAGCTGCCTTGGTAACCTTGCCAGCGTGCCATGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27473.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis