Browse Element(s) Details


Os.26927.1.S1_at

Description gb:AK107137.1
DB_XREF= gi:32992346
TID=Os.26927.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.26927 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-124-C11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-124-C11, full insert sequence.
FL= gb:AK107137.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4429010/11CBL-interacting serine/threonine-protein kinase 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g44240Os.14919.1.S1_at4/117+26437563..26441785transposon protein, putative, Mutator sub-class
LOC_Os07g44240OsAffx.29313.1.S1_at1/117+26437563..26441785transposon protein, putative, Mutator sub-class
LOC_Os07g44240Os.56216.1.S1_at1/117+26437563..26441785transposon protein, putative, Mutator sub-class
LOC_Os07g44250Os.12381.1.S1_s_at11/117+26443941..26444820Dirigent-like protein, expressed
LOC_Os07g44250Os.12381.1.S1_x_at11/117+26443941..26444820Dirigent-like protein, expressed
LOC_Os07g44250Os.43269.1.S1_x_at7/117+26443941..26444820Dirigent-like protein, expressed
LOC_Os07g44260OsAffx.5632.1.S1_x_at1/117+26448311..26448775Dirigent-like protein
LOC_Os07g44260OsAffx.5632.1.S1_at1/117+26448311..26448775Dirigent-like protein
LOC_Os07g44280OsAffx.16709.2.S1_s_at11/117+26455105..26455854Dirigent-like protein, expressed
LOC_Os07g44300Os.54134.1.S1_at11/117+26462481..26469038pentatricopeptide, putative, expressed
LOC_Os07g44290Os.26927.1.S1_at10/117+26462749..26467163CBL-interacting serine/threonine-protein kinase 1, putative, expressed
LOC_Os07g44310OsAffx.5631.1.S1_at11/117+26469881..26471425DnaJ domain containing protein, expressed
LOC_Os07g44310Os.57202.1.S1_at10/117+26469881..26471425DnaJ domain containing protein, expressed
LOC_Os07g44320Os.27473.1.S1_at11/117+26472527..26476633expressed protein
LOC_Os07g44330Os.2914.1.S1_at11/117+26479551..26483613ATPase, histidine kinase, DNA gyrase B-, and HSP90-like domain containing protein, expressed
LOC_Os07g44340NANA7+26490730..26493859retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0009628biological_processresponse to abiotic stimulus
GO:0009735biological_processresponse to cytokinin stimulus
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009738biological_processabscisic acid mediated signaling
GO:0009845biological_processseed germination
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26927.1.S1_at--689--191Chr07:26466405..26466542 (25 bp)
ATTTCTGCTGAGGTGTTTGAGATCA
LOC_Os07g44290
Os.26927.1.S1_at--580--7671NONE
GGGATTGTTCCCTTTACAGACAGCT
NONE
Os.26927.1.S1_at--1051--2131Chr07:26466597..26466767 (25 bp)
ACAGACAGCTATGTGCGTCACTTTC
LOC_Os07g44290
Os.26927.1.S1_at--858--5831Chr07:26466826..26466850 (25 bp)
GACCTTTGTCGATATAACAGTAGCT
LOC_Os07g44290
Os.26927.1.S1_at--310--10251Chr07:26466851..26466875 (25 bp)
TTTGATAAAAGGGTCTCTCTAGCTT
LOC_Os07g44290
Os.26927.1.S1_at--258--3771Chr07:26466867..26466891 (25 bp)
CTCTAGCTTTTAGTTGTGAAGGCTC
LOC_Os07g44290
Os.26927.1.S1_at--805--7351Chr07:26466882..26466906 (25 bp)
GTGAAGGCTCTAGCATTTTTAACAA
LOC_Os07g44290
Os.26927.1.S1_at--733--3251Chr07:26466919..26466943 (25 bp)
CAACGACGTATGACACAGTTTTGTA
LOC_Os07g44290
Os.26927.1.S1_at--835--9591Chr07:26466999..26467023 (25 bp)
TCATCCAAGTATTTCCTTTAGGAGT
LOC_Os07g44290
Os.26927.1.S1_at--96--10471Chr07:26467049..26467073 (25 bp)
TTACTGGTAAATCGCTACCTCCTGG
LOC_Os07g44290
Os.26927.1.S1_at--736--9971Chr07:26467064..26467088 (25 bp)
TACCTCCTGGGCAAATTGGCTACTG
LOC_Os07g44290
Target Sequence 
ATTTCTGCTGAGGTGTTTGAGATCAATGAATCTCTTTATGTTGTTGAGCTAAAAAGGTCATCTGGGGATTGTTCCCTTTA
CAGACAGCTATGTGCGTCACTTTCNGAAGACTTGGGCATATGCAAAAGGCAACAGCTTTTGAAGAAAGATTCTATGAGAC
AAGACCTTTGTCGATATAACAGTAGCTTTTGATAAAAGGGTCTCTCTAGCTTTTAGTTGTGAAGGCTCTAGCATTTTTAA
CAAGAGCCCCCAATACAACGACGTATGACACAGTTTTGTAAAATTAAACTGTAAATACAAAACAATCCAATTGTACACCG
AAAAGAGTATACCGNTCATCCAAGTATTTCCTTTAGGAGTNCATTAGTTTGTGTTCTTTTTGCCTTTACTGGTAAATCGC
TACCTCCTGGGCAAATTGGCTACTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26927.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis