Browse Element(s) Details


Os.2914.1.S1_at

Description gb:AY026039.1
DB_XREF= gi:12829951
TID=Os.2914.1
CNT=62
FEA=FLmRNA
TIER=FL+Stack
STK=13
UG=Os.2914 (NCBI UniGene Cluster)
DEF=Oryza sativa subsp. indica pyruvate dehydrogenase kinase 1 mRNA, complete cds.
PROD=pyruvate dehydrogenase kinase 1
FL= gb:AK069157.1 gb:AY026039.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4433011/11ATPase, histidine kinase, DNA gyrase B-, and HSP90-like domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g44280OsAffx.16709.2.S1_s_at11/117+26455105..26455854Dirigent-like protein, expressed
LOC_Os07g44300Os.54134.1.S1_at11/117+26462481..26469038pentatricopeptide, putative, expressed
LOC_Os07g44290Os.26927.1.S1_at10/117+26462749..26467163CBL-interacting serine/threonine-protein kinase 1, putative, expressed
LOC_Os07g44310OsAffx.5631.1.S1_at11/117+26469881..26471425DnaJ domain containing protein, expressed
LOC_Os07g44310Os.57202.1.S1_at10/117+26469881..26471425DnaJ domain containing protein, expressed
LOC_Os07g44320Os.27473.1.S1_at11/117+26472527..26476633expressed protein
LOC_Os07g44330Os.2914.1.S1_at11/117+26479551..26483613ATPase, histidine kinase, DNA gyrase B-, and HSP90-like domain containing protein, expressed
LOC_Os07g44340NANA7+26490730..26493859retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g44350Os.7186.1.S1_at11/117+26499770..26502532Novel plant SNARE 11, putative, expressed
LOC_Os07g44360OsAffx.28899.1.S1_at11/117+26502757..26509762Serine/threonine-protein kinase Haspin, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0004740molecular_function[pyruvate dehydrogenase (lipoamide)] kinase activity
GO:0005524molecular_functionATP binding
GO:0009927molecular_functionhistidine phosphotransfer kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2914.1.S1_at--234--5891Chr07:26480610..26480634 (25 bp)
GAGCGGCCTTCCAAGAATTTTCACA
LOC_Os07g44330
Os.2914.1.S1_at--275--10011Chr07:26480577..26480601 (25 bp)
TAGCACTGCAAAGAATCCACCTGAT
LOC_Os07g44330
Os.2914.1.S1_at--691--3071Chr07:26480499..26480523 (25 bp)
AATCAGTCGCCTGTATGCTCGATAT
LOC_Os07g44330
Os.2914.1.S1_at--1046--4271Chr07:26480162..26480186 (25 bp)
CCTGCACTTGTCACGGTTGGGAGAT
LOC_Os07g44330
Os.2914.1.S1_at--292--4411Chr07:26480020..26480044 (25 bp)
GCCACCTATAGCTGTTAACCTTCTA
LOC_Os07g44330
Os.2914.1.S1_at--648--10551Chr07:26480000..26480024 (25 bp)
TTCTACAGTAGTTGCCACGGTTTCA
LOC_Os07g44330
Os.2914.1.S1_at--353--1931Chr07:26479984..26480008 (25 bp)
ACGGTTTCATCACTTCAGCTTTGCA
LOC_Os07g44330
Os.2914.1.S1_at--496--9511Chr07:26479920..26479944 (25 bp)
TCTCTACTCTGCCTTGTAGCGAAAT
LOC_Os07g44330
Os.2914.1.S1_at--117--8291Chr07:26479871..26479895 (25 bp)
GGCATTGTTCATACTTCTCGTACTT
LOC_Os07g44330
Os.2914.1.S1_at--1105--9391Chr07:26479854..26479878 (25 bp)
TCGTACTTGTTGAGCTTCATGGCTT
LOC_Os07g44330
Os.2914.1.S1_at--590--3491Chr07:26479837..26479861 (25 bp)
CATGGCTTGGTGCAGATTGTACTTT
LOC_Os07g44330
Target Sequence 
GAGCGGCCTTCCAAGAATTTTCACATATCTATATAGCACTGCAAAGAATCCACCTGATATGGATTGCCCTAGTGAAGGAG
TAACTATGGCTGGATATGGCTATGGTCTTCCAATCAGTCGCCTGTATGCTCGATATTTTGGTGGTGACCTGCAAATCATC
TCTATGGAAGGATACGGCACCGATGCTTACCTGCACTTGTCACGGTTGGGAGATTCGGAGGAGCCCTTGCCTTGAAGGCT
TCCCTGTCCTGATACCATCTCTGTAATTAATTAGGTTGCTCTTGTCTCTTGTAATTCCTGGGCTGGTTTGGAATATTGTT
TTCAAGTGCCAGCCACCTATAGCTGTTAACCTTCTACAGTAGTTGCCACGGTTTCATCACTTCAGCTTTGCAGCAGCATG
AGCACAAGTCTCCTCTCTCTCTTTCTCTCTCTCTCTACTCTGCCTTGTAGCGAAATGTANAATTCTTCTGCCACGCACAT
GGCATTGTTCATACTTCTCGTACTTGTTGAGCTTCATGGCTTGGTGCAGATTGTACTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2914.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis