Browse Element(s) Details


OsAffx.5631.1.S1_at

Description tigr:9635.m04449
TID=OsAffx.5631.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=DnaJ domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4431011/11DnaJ domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g44260OsAffx.5632.1.S1_x_at1/117+26448311..26448775Dirigent-like protein
LOC_Os07g44260OsAffx.5632.1.S1_at1/117+26448311..26448775Dirigent-like protein
LOC_Os07g44280OsAffx.16709.2.S1_s_at11/117+26455105..26455854Dirigent-like protein, expressed
LOC_Os07g44300Os.54134.1.S1_at11/117+26462481..26469038pentatricopeptide, putative, expressed
LOC_Os07g44290Os.26927.1.S1_at10/117+26462749..26467163CBL-interacting serine/threonine-protein kinase 1, putative, expressed
LOC_Os07g44310OsAffx.5631.1.S1_at11/117+26469881..26471425DnaJ domain containing protein, expressed
LOC_Os07g44310Os.57202.1.S1_at10/117+26469881..26471425DnaJ domain containing protein, expressed
LOC_Os07g44320Os.27473.1.S1_at11/117+26472527..26476633expressed protein
LOC_Os07g44330Os.2914.1.S1_at11/117+26479551..26483613ATPase, histidine kinase, DNA gyrase B-, and HSP90-like domain containing protein, expressed
LOC_Os07g44340NANA7+26490730..26493859retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5631.1.S1_at--667--9691Chr07:26470363..26470762 (25 bp)
TCAAGCAGATATCAGAAGCATATTC
LOC_Os07g44310
OsAffx.5631.1.S1_at--666--5391Chr07:26470752..26470776 (25 bp)
GAAGCATATTCTTGTTTGAAGGATG
LOC_Os07g44310
OsAffx.5631.1.S1_at--579--3511Chr07:26471002..26471026 (25 bp)
CATGTGATGAGGTCTGGTGTTCCGA
LOC_Os07g44310
OsAffx.5631.1.S1_at--951--9451Chr07:26471014..26471038 (25 bp)
TCTGGTGTTCCGACGGGATTTGGAC
LOC_Os07g44310
OsAffx.5631.1.S1_at--703--8531Chr07:26471034..26471058 (25 bp)
TGGACGATCAAATAAGACATTGGTT
LOC_Os07g44310
OsAffx.5631.1.S1_at--664--10451Chr07:26471057..26471081 (25 bp)
TTAAAGCCCCTTTTCTACTCATAAT
LOC_Os07g44310
OsAffx.5631.1.S1_at--440--9891Chr07:26471072..26471096 (25 bp)
TACTCATAATTTTTGCAGCGGTTTC
LOC_Os07g44310
OsAffx.5631.1.S1_at--570--10391Chr07:26471082..26471106 (25 bp)
TTTTGCAGCGGTTTCATTGGGTGGA
LOC_Os07g44310
OsAffx.5631.1.S1_at--805--10551Chr07:26471094..26471118 (25 bp)
TTCATTGGGTGGATTCAGCGCTTCA
LOC_Os07g44310
OsAffx.5631.1.S1_at--304--6571Chr07:26471105..26471213 (25 bp)
GATTCAGCGCTTCAAGAGCATACCA
LOC_Os07g44310
OsAffx.5631.1.S1_at--482--2771Chr07:26471202..26471226 (25 bp)
AAGAGCATACCAGCGGCAGAAAGCA
LOC_Os07g44310
Target Sequence 
TCAAGCAGATATCAGAAGCATATTCTTGTTTGAAGGATGGAAGAAGATATGGGAGTAGGATGGAAGTACATGTGATGAGG
TCTGGTGTTCCGACGGGATTTGGACGATCAAATAAGACATTGGTTAAAGCCCCTTTTCTACTCATAATTTTTGCAGCGGT
TTCATTGGGTGGATTCAGCGCTTCAAGAGCATACCAGCGGCAGAAAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5631.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis