Browse Element(s) Details


OsAffx.16709.2.S1_s_at

Description tigr:9635.m04446
TID=OsAffx.16709.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Plant disease resistance response protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4428011/11Dirigent-like protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g44230Os.53888.1.S1_at11/117+26431006..26433562ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein, putative, expressed
LOC_Os07g44240Os.14919.1.S1_at4/117+26437563..26441785transposon protein, putative, Mutator sub-class
LOC_Os07g44240OsAffx.29313.1.S1_at1/117+26437563..26441785transposon protein, putative, Mutator sub-class
LOC_Os07g44240Os.56216.1.S1_at1/117+26437563..26441785transposon protein, putative, Mutator sub-class
LOC_Os07g44250Os.12381.1.S1_s_at11/117+26443941..26444820Dirigent-like protein, expressed
LOC_Os07g44250Os.12381.1.S1_x_at11/117+26443941..26444820Dirigent-like protein, expressed
LOC_Os07g44250Os.43269.1.S1_x_at7/117+26443941..26444820Dirigent-like protein, expressed
LOC_Os07g44260OsAffx.5632.1.S1_x_at1/117+26448311..26448775Dirigent-like protein
LOC_Os07g44260OsAffx.5632.1.S1_at1/117+26448311..26448775Dirigent-like protein
LOC_Os07g44280OsAffx.16709.2.S1_s_at11/117+26455105..26455854Dirigent-like protein, expressed
LOC_Os07g44300Os.54134.1.S1_at11/117+26462481..26469038pentatricopeptide, putative, expressed
LOC_Os07g44290Os.26927.1.S1_at10/117+26462749..26467163CBL-interacting serine/threonine-protein kinase 1, putative, expressed
LOC_Os07g44310OsAffx.5631.1.S1_at11/117+26469881..26471425DnaJ domain containing protein, expressed
LOC_Os07g44310Os.57202.1.S1_at10/117+26469881..26471425DnaJ domain containing protein, expressed
LOC_Os07g44320Os.27473.1.S1_at11/117+26472527..26476633expressed protein
LOC_Os07g44330Os.2914.1.S1_at11/117+26479551..26483613ATPase, histidine kinase, DNA gyrase B-, and HSP90-like domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009807biological_processlignan biosynthesis
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16709.2.S1_s_at--11--5051Chr07:26455258..26455282 (25 bp)
GCAGATGGACATCAAACTCTATGAA
LOC_Os07g44280
OsAffx.16709.2.S1_s_at--253--3291Chr07:26455246..26455270 (25 bp)
CAAACTCTATGAATGCTACGTCTGA
LOC_Os07g44280
OsAffx.16709.2.S1_s_at--336--2991Chr07:26455235..26455259 (25 bp)
AATGCTACGTCTGATAACTAATTAA
LOC_Os07g44280
OsAffx.16709.2.S1_s_at--1050--2531Chr07:26455220..26455244 (25 bp)
AACTAATTAATCGATGATGTGGTGT
LOC_Os07g44280
OsAffx.16709.2.S1_s_at--324--2931Chr07:26455187..26455211 (25 bp)
AAGGAATTTGTTTCTCGATATTAGT
LOC_Os07g44280
OsAffx.16709.2.S1_s_at--405--6831Chr07:26455178..26455202 (25 bp)
GTTTCTCGATATTAGTATTTACTTG
LOC_Os07g44280
OsAffx.16709.2.S1_s_at--510--171Chr07:26455162..26455186 (25 bp)
ATTTACTTGATGACGAGTACCTGCA
LOC_Os07g44280
OsAffx.16709.2.S1_s_at--367--2071Chr07:26455158..26455182 (25 bp)
ACTTGATGACGAGTACCTGCAGTAT
LOC_Os07g44280
OsAffx.16709.2.S1_s_at--1146--10771Chr07:26455156..26455180 (25 bp)
TTGATGACGAGTACCTGCAGTATCT
LOC_Os07g44280
OsAffx.16709.2.S1_s_at--450--5031Chr07:26455140..26455164 (25 bp)
GCAGTATCTGTATGCACCGATGAGT
LOC_Os07g44280
OsAffx.16709.2.S1_s_at--313--6911Chr07:26455137..26455161 (25 bp)
GTATCTGTATGCACCGATGAGTGTG
LOC_Os07g44280
Target Sequence 
GCAGATGGACATCAAACTCTATGAATGCTACGTCTGATAACTAATTAATCGATGATGTGGTGTTTATTTAAAAGGAATTT
GTTTCTCGATATTAGTATTTACTTGATGACGAGTACCTGCAGTATCTGTATGCACCGATGAGTGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16709.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis