Browse Element(s) Details


Os.43269.1.S1_x_at

Description gb:AU065923
DB_XREF= gi:4969019
DB_XREF=AU065923
CLONE=S15948_1A
TID=Os.43269.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.43269 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) contains EST AU065923(S15948)~similar to disease resistance response protein (OJ1003_C06.30), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g442507/11Dirigent-like protein, expressed
LOC_Os07g449203/11Dirigent-like protein
LOC_Os07g449301/11Dirigent-like protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g44210Os.23232.1.S1_at11/117+26415275..26427637SNF2 domain-containing protein, putative, expressed
LOC_Os07g44210OsAffx.6305.1.S1_at2/117+26415275..26427637SNF2 domain-containing protein, putative, expressed
LOC_Os07g44210OsAffx.15286.1.S1_at2/117+26415275..26427637SNF2 domain-containing protein, putative, expressed
LOC_Os07g44220OsAffx.28898.1.S1_at11/117+26429266..26429583hypothetical protein
LOC_Os07g44230Os.53888.1.S1_at11/117+26431006..26433562ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein, putative, expressed
LOC_Os07g44240Os.14919.1.S1_at4/117+26437563..26441785transposon protein, putative, Mutator sub-class
LOC_Os07g44240OsAffx.29313.1.S1_at1/117+26437563..26441785transposon protein, putative, Mutator sub-class
LOC_Os07g44240Os.56216.1.S1_at1/117+26437563..26441785transposon protein, putative, Mutator sub-class
LOC_Os07g44250Os.12381.1.S1_s_at11/117+26443941..26444820Dirigent-like protein, expressed
LOC_Os07g44250Os.12381.1.S1_x_at11/117+26443941..26444820Dirigent-like protein, expressed
LOC_Os07g44250Os.43269.1.S1_x_at7/117+26443941..26444820Dirigent-like protein, expressed
LOC_Os07g44260OsAffx.5632.1.S1_x_at1/117+26448311..26448775Dirigent-like protein
LOC_Os07g44260OsAffx.5632.1.S1_at1/117+26448311..26448775Dirigent-like protein
LOC_Os07g44280OsAffx.16709.2.S1_s_at11/117+26455105..26455854Dirigent-like protein, expressed
LOC_Os07g44300Os.54134.1.S1_at11/117+26462481..26469038pentatricopeptide, putative, expressed
LOC_Os07g44290Os.26927.1.S1_at10/117+26462749..26467163CBL-interacting serine/threonine-protein kinase 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009807biological_processlignan biosynthesis
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.43269.1.S1_x_at--761--1773Chr07:26801067..26801091 (25 bp)
ACCGGCGGCACCTTCTTCGGCGAGG
LOC_Os07g44920
Os.43269.1.S1_x_at--1138--2192Chr07:26801181..26801205 (25 bp)
ACAACAGCAAGGAGGCGTTCAACGC
LOC_Os07g44920
Os.43269.1.S1_x_at--168--4572Chr07:26801268..26801292 (25 bp)
GCGCCGACATCATCGCCGAGAAGAC
LOC_Os07g44920
Os.43269.1.S1_x_at--286--151Chr07:26444100..26444124 (25 bp)
ATTACGTTGCTCTGAATTCTGATAG
LOC_Os07g44250
Os.43269.1.S1_x_at--1155--351Chr07:26444061..26444085 (25 bp)
ATAATACTGCTATACACGGTGTGAT
LOC_Os07g44250
Os.43269.1.S1_x_at--1150--3971Chr07:26444045..26444069 (25 bp)
CGGTGTGATGCGTGATTTATTTCCA
LOC_Os07g44250
Os.43269.1.S1_x_at--695--611NONE
ATGCGTGATTTATTTCCATCGGGAA
NONE
Os.43269.1.S1_x_at--864--4271NONE
CCATCGGGAAATATACTTGTTTGCT
NONE
Os.43269.1.S1_x_at--425--2071NONE
ACTTGTTTGCTTTACGAGTTATATG
NONE
Os.43269.1.S1_x_at--696--6071Chr07:26443998..26444018 (21 bp)
GAGTTATATGCACCGATGAATTTTC
LOC_Os07g44250
Os.43269.1.S1_x_at--411--5211Chr09:11435523..11435542 (20 bp)
GAATTTTCAAAAATGTATCCCAACT
NONE
Target Sequence 
ACCGGCGGCACCTTCTTCGGCGAGGGGNTCTACCTCTACAACAGCAAGGAGGCGTTCAACGCGTGGNTCGCCTTCTCCAT
CGTGTTCAACTCCACGGGGCGCCGCGGCACGCTCAACCTCATGGGCGCCGACATCATCGCCGAGAAGACGAGGGACATCT
CCGTCGTGGGCGGCACCGGCGACTTCTTCATGTCNCGCGGCGTCGCCACCCTCCGCACCGACGCNTTCGAGGGCTTCACC
TACTTCNGGCTGCAGATGGACATCAAGCTCTACGANTGCTACGTNNNNTGATTACGTTGCTCTGAATTCTGATAGATGGT
AATTAACATATAATACTGCTATACACGGTGTGATGCGTGATTTATTTCCATCGGGAAATATACTTGTTTGCTTTACGAGT
TATATGCACCGATGAATTTTCAAAAATGTATCCCAACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.43269.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis