Browse Element(s) Details


OsAffx.6305.1.S1_at

Description tigr:9637.m01402
TID=OsAffx.6305.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1666010/11hypothetical protein
LOC_Os07g442102/11SNF2 domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g16590OsAffx.17744.1.S1_at11/119+10184189..10185583Protein kinase domain containing protein
LOC_Os09g16600Os.26886.6.S1_s_at5/119+10188250..10190753hypothetical protein
LOC_Os09g16600Os.26886.2.S1_s_at3/119+10188250..10190753hypothetical protein
LOC_Os09g16600OsAffx.16467.1.S1_at3/119+10188250..10190753hypothetical protein
LOC_Os09g16610NANA9+10191709..10192095hypothetical protein
LOC_Os09g16620Os.26886.1.S1_x_at1/119+10193999..10195657transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g16630Os.26886.3.S1_x_at1/119+10196559..10196987transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g16640NANA9+10198798..10200195Transposable element protein, putative, MuDR
LOC_Os09g16650OsAffx.17745.1.S1_at11/119+10202804..10203856Legume lectins alpha domain containing protein
LOC_Os09g16660OsAffx.6305.1.S1_at10/119+10206266..10210552hypothetical protein
LOC_Os09g16660Os.36056.1.A1_at1/119+10206266..10210552hypothetical protein
LOC_Os09g16660OsAffx.9652.1.S1_x_at1/119+10206266..10210552hypothetical protein
LOC_Os09g16670NANA9+10212401..10213070Legume lectins alpha domain containing protein
LOC_Os09g16680NANA9+10214246..10216267retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g16690NANA9+10216590..10219640retrotransposon protein, putative, unclassified
LOC_Os09g16700NANA9+10221168..10221830Legume lectins beta domain containing protein
LOC_Os09g16710OsAffx.17746.1.S1_at11/119+10223463..10225382expressed protein
LOC_Os09g16720OsAffx.17747.1.S1_at10/119+10228039..10228354hypothetical protein
LOC_Os09g16729Os.37916.1.S1_at3/119+10232559..10233300NA

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Gene Ontology Classification
GO idTypeName
GO:0006333biological_processchromatin assembly or disassembly
GO:0003677molecular_functionDNA binding
GO:0003682molecular_functionchromatin binding
GO:0004386molecular_functionhelicase activity
GO:0005524molecular_functionATP binding
GO:0008094molecular_functionDNA-dependent ATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6305.1.S1_at--821--4751Chr09:10208128..10208152 (25 bp)
GCTGACACGACGACGATAGTGAGGC
LOC_Os09g16660
OsAffx.6305.1.S1_at--428--7651Chr09:10208172..10208196 (25 bp)
GGGATGTCGGTACAACAATGACCAT
LOC_Os09g16660
OsAffx.6305.1.S1_at--790--7191Chr09:10208177..10208201 (25 bp)
GTCGGTACAACAATGACCATGTGCC
LOC_Os09g16660
OsAffx.6305.1.S1_at--25--8551Chr09:10208221..10208245 (25 bp)
TGGAGCATTGGAGCGTTATCTATGA
LOC_Os09g16660
OsAffx.6305.1.S1_at--694--4031Chr09:10208234..10208258 (25 bp)
CGTTATCTATGAGTCGGCAGGGAGC
LOC_Os09g16660
OsAffx.6305.1.S1_at--863--5074Chr09:2280507..2280528 (22 bp)
GCAGCGCGCTGGGAAAACGTCCAAA
NONE
OsAffx.6305.1.S1_at--373--45724Chr12:20113145..20113351 (25 bp)
GCGCGCTGGGAAAACGTCCAAACGA
NONE
OsAffx.6305.1.S1_at--880--72312Chr10:19792962..19792981 (20 bp)
GTCCAAACGAACACAGCCTTGGTGT
NONE
OsAffx.6305.1.S1_at--1115--3371Chr09:10210270..10210294 (25 bp)
CAGCCTTGGTGTTGTAGGACGAGCC
LOC_Os09g16660
OsAffx.6305.1.S1_at--736--10091Chr09:10210284..10210308 (25 bp)
TAGGACGAGCCGAGTATGATGTTGC
LOC_Os09g16660
OsAffx.6305.1.S1_at--390--4231Chr09:10210293..10210317 (25 bp)
CCGAGTATGATGTTGCTTGGCTTGA
LOC_Os09g16660
Target Sequence 
GCTGACACGACGACGATAGTGAGGCCGGTGAGGTTGTTTGGCGGGGGATGTCGGTACAACAATGACCATGTGCCGATGGA
GGATGGTCGGTGGTGGAGCATTGGAGCGTTATCTATGAGTCGGCAGGGAGCGGGCGGCAGCGCGCTGGGAAAACGTCCAA
ACGAACACAGCCTTGGTGTTGTAGGACGAGCCGAGTATGATGTTGCTTGGCTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6305.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis