Browse Element(s) Details


OsAffx.17744.1.S1_at

Description tigr:9637.m01394
TID=OsAffx.17744.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein kinase domain
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1659011/11Protein kinase domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g16550OsAffx.29876.1.S1_at11/119+10157596..10159953ankyrin repeat family protein, putative
LOC_Os09g16560OsAffx.17743.1.S1_at10/119+10160766..10162952hypothetical protein
LOC_Os09g16570NANA9+10170261..10171249hypothetical protein
LOC_Os09g16580OsAffx.7510.2.S1_at11/119+10173376..10176698hypothetical protein
LOC_Os09g16580Os.45173.1.S1_x_at2/119+10173376..10176698hypothetical protein
LOC_Os09g16590OsAffx.17744.1.S1_at11/119+10184189..10185583Protein kinase domain containing protein
LOC_Os09g16600Os.26886.6.S1_s_at5/119+10188250..10190753hypothetical protein
LOC_Os09g16600Os.26886.2.S1_s_at3/119+10188250..10190753hypothetical protein
LOC_Os09g16600OsAffx.16467.1.S1_at3/119+10188250..10190753hypothetical protein
LOC_Os09g16610NANA9+10191709..10192095hypothetical protein
LOC_Os09g16620Os.26886.1.S1_x_at1/119+10193999..10195657transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g16630Os.26886.3.S1_x_at1/119+10196559..10196987transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g16640NANA9+10198798..10200195Transposable element protein, putative, MuDR
LOC_Os09g16650OsAffx.17745.1.S1_at11/119+10202804..10203856Legume lectins alpha domain containing protein
LOC_Os09g16660OsAffx.6305.1.S1_at10/119+10206266..10210552hypothetical protein
LOC_Os09g16660Os.36056.1.A1_at1/119+10206266..10210552hypothetical protein
LOC_Os09g16660OsAffx.9652.1.S1_x_at1/119+10206266..10210552hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17744.1.S1_at--62--1891Chr09:10184595..10184619 (25 bp)
ACGATCATCTCTACAGTCCAGGAAG
LOC_Os09g16590
OsAffx.17744.1.S1_at--288--1411Chr09:10184618..10184642 (25 bp)
AGACTTCTTACATGGCCTACGAGGT
LOC_Os09g16590
OsAffx.17744.1.S1_at--303--291Chr09:10185041..10185065 (25 bp)
ATAGTATTTGCCATAGGCTCCGGCC
LOC_Os09g16590
OsAffx.17744.1.S1_at--767--2351Chr09:10185154..10185178 (25 bp)
AAAGCTCGGCGATTTCGGGCTGCCT
LOC_Os09g16590
OsAffx.17744.1.S1_at--1044--9431Chr09:10185178..10185202 (25 bp)
TCGGCACTTCTTTCAGTACGATGGT
LOC_Os09g16590
OsAffx.17744.1.S1_at--700--6991Chr09:10185193..10185217 (25 bp)
GTACGATGGTGAAACCGCCTCTAGC
LOC_Os09g16590
OsAffx.17744.1.S1_at--81--4171Chr09:10185208..10185232 (25 bp)
CGCCTCTAGCTCATATCGACAAATG
LOC_Os09g16590
OsAffx.17744.1.S1_at--94--2291Chr09:10185228..10185252 (25 bp)
AAATGCCGGTCAGCTCTCGAGGATA
LOC_Os09g16590
OsAffx.17744.1.S1_at--102--7691Chr09:10185263..10185287 (25 bp)
GGGTTACTCCACACGGATCAGGCAA
LOC_Os09g16590
OsAffx.17744.1.S1_at--16--7391Chr09:10185391..10185415 (25 bp)
TGTTAAATTCGTCTGGGAGTGCCAC
LOC_Os09g16590
OsAffx.17744.1.S1_at--453--2951Chr09:10185455..10185479 (25 bp)
AATGGCGAGTTCAACCGGGAGCAGA
LOC_Os09g16590
Target Sequence 
ACGATCATCTCTACAGTCCAGGAAGACTTCTTACATGGCCTACGAGGTACAAGATAGTATTTGCCATAGGCTCCGGCCTT
AAGCACCTCCATCAGGACGTCCGCCCCACATTCCCGCACGGCAACATCAAACCAAGCAATGTGTTGCTGGACGAAGAGAT
GAACGCAAAGCTCGGCGATTTCGGGCTGCCTCGGCACTTCTTTCAGTACGATGGTGAAACCGCCTCTAGCTCATATCGAC
AAATGCCGGTCAGCTCTCGAGGATACGTGGAACCTGGGTTACTCCACACGGATCAGGCAACCACCTCGTCGGACGTCTAC
AGCTTCGGAGTTGTGCTGCTGGAGATTGCGTGCGGTCAGCCGCCTATTATCCTCCAGCAAGACCAGGCTGAAGCAAATAG
CCTTGTTAAATTCGTCTGGGAGTGCCACAAAAAGGGTTCGATAATTGAAGCAGCGGACAAGCGGCTGAATGGCGAGTTCA
ACCGGGAGCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17744.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis