Browse Element(s) Details


OsAffx.7510.2.S1_at

Description tigr:9637.m01393
TID=OsAffx.7510.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1658011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g16540Os.53941.1.S1_at11/119+10151940..10156507Protein kinase domain containing protein, expressed
LOC_Os09g16550OsAffx.29876.1.S1_at11/119+10157596..10159953ankyrin repeat family protein, putative
LOC_Os09g16560OsAffx.17743.1.S1_at10/119+10160766..10162952hypothetical protein
LOC_Os09g16570NANA9+10170261..10171249hypothetical protein
LOC_Os09g16580OsAffx.7510.2.S1_at11/119+10173376..10176698hypothetical protein
LOC_Os09g16580Os.45173.1.S1_x_at2/119+10173376..10176698hypothetical protein
LOC_Os09g16590OsAffx.17744.1.S1_at11/119+10184189..10185583Protein kinase domain containing protein
LOC_Os09g16600Os.26886.6.S1_s_at5/119+10188250..10190753hypothetical protein
LOC_Os09g16600Os.26886.2.S1_s_at3/119+10188250..10190753hypothetical protein
LOC_Os09g16600OsAffx.16467.1.S1_at3/119+10188250..10190753hypothetical protein
LOC_Os09g16610NANA9+10191709..10192095hypothetical protein
LOC_Os09g16620Os.26886.1.S1_x_at1/119+10193999..10195657transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g16630Os.26886.3.S1_x_at1/119+10196559..10196987transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g16640NANA9+10198798..10200195Transposable element protein, putative, MuDR

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Gene Ontology Classification
GO idTypeName
GO:0009684biological_processindoleacetic acid biosynthesis
GO:0005739cellular_componentmitochondrion
GO:0004040molecular_functionamidase activity
GO:0016810molecular_functionhydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
GO:0017068molecular_functionglutamyl-tRNA(Gln) amidotransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7510.2.S1_at--644--8531Chr09:10174252..10174400 (25 bp)
TGGACGGTCGATATTCAGCAATTGT
LOC_Os09g16580
OsAffx.7510.2.S1_at--914--10771Chr09:10174231..10174255 (25 bp)
TTGTTGATCAGTCTCGGTCTCAGCC
LOC_Os09g16580
OsAffx.7510.2.S1_at--967--2471Chr09:10173859..10173883 (25 bp)
AACAGCCTCAAGTCAACGCTTGTGT
LOC_Os09g16580
OsAffx.7510.2.S1_at--427--5331Chr09:10173823..10173847 (25 bp)
GAAGTGCTCGTCTTGAGATCACCAA
LOC_Os09g16580
OsAffx.7510.2.S1_at--832--6271Chr09:10173770..10173794 (25 bp)
GATGTAGTTTATCCGCACAATCTTC
LOC_Os09g16580
OsAffx.7510.2.S1_at--843--3031Chr09:10173752..10173776 (25 bp)
AATCTTCGATTCACCGTTGGCAAGG
LOC_Os09g16580
OsAffx.7510.2.S1_at--332--4271Chr09:10173538..10173562 (25 bp)
CCTGTCCGCCGTTCATGAGGAAGGA
LOC_Os09g16580
OsAffx.7510.2.S1_at--145--7411Chr09:10173479..10173503 (25 bp)
GTGTTGCTCCAGAGATGGCACGGTT
LOC_Os09g16580
OsAffx.7510.2.S1_at--359--8511Chr09:10173464..10173488 (25 bp)
TGGCACGGTTGCTTGTACAGTATTC
LOC_Os09g16580
OsAffx.7510.2.S1_at--426--9871Chr09:10173449..10173473 (25 bp)
TACAGTATTCGTCCGGCCTTTGGGT
LOC_Os09g16580
OsAffx.7510.2.S1_at--1015--10531Chr09:10173407..10173431 (25 bp)
TTCTTGGCCAGGACGACCGAGGTGT
LOC_Os09g16580
Target Sequence 
TGGACGGTCGATATTCAGCAATTGTTGATCAGTCTCGGTCTCAGCCCTCACGGCGGCACGGAGTTAGGAAACTAACGGGA
AAGGATGGAAAACGCGACGGAGTGAAACAGCCTCAAGTCAACGCTTGTGTTGAGTATGAGAGAAGTGCTCGTCTTGAGAT
CACCAAGCGTGACAGCGAGAACGTTCGATGTATTGATGTAGTTTATCCGCACAATCTTCGATTCACCGTTGGCAAGGTCG
CCAGCGACGACCTTGTAGGACGTGAGGAAGAATGCCAGCCCGCCCTGTCCGCCGTTCATGAGGAAGGAGAAGGTGGTGGT
GAAGCTCGTTACCTCGCCGGTGGTGTTGCTCCAGAGATGGCACGGTTGCTTGTACAGTATTCGTCCGGCCTTTGGGTTGA
CTTCGCCGGTGCCCTTCTTGGCCAGGACGACCGAGGTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7510.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis