Browse Element(s) Details


Os.53941.1.S1_at

Description gb:AK100955.1
DB_XREF= gi:32986164
TID=Os.53941.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53941 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023140A19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023140A19, full insert sequence.
FL= gb:AK100955.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1654011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g16510Os.27227.1.S1_at11/119+10127836..10130089WRKY DNA binding domain containing protein, expressed
LOC_Os09g16520OsAffx.29875.1.S1_at11/119+10130348..10137130Cytochrome b5-like Heme/Steroid binding domain containing protein, expressed
LOC_Os09g16520OsAffx.29875.1.S1_s_at10/119+10130348..10137130Cytochrome b5-like Heme/Steroid binding domain containing protein, expressed
LOC_Os09g16520OsAffx.6277.1.S1_at2/119+10130348..10137130Cytochrome b5-like Heme/Steroid binding domain containing protein, expressed
LOC_Os09g16520Os.52634.1.S1_at1/119+10130348..10137130Cytochrome b5-like Heme/Steroid binding domain containing protein, expressed
LOC_Os09g16530Os.14919.1.S1_at5/119+10138224..10144240Transposable element protein, putative, MuDR
LOC_Os09g16530OsAffx.29313.1.S1_at1/119+10138224..10144240Transposable element protein, putative, MuDR
LOC_Os09g16530Os.56216.1.S1_at1/119+10138224..10144240Transposable element protein, putative, MuDR
LOC_Os09g16540Os.53941.1.S1_at11/119+10151940..10156507Protein kinase domain containing protein, expressed
LOC_Os09g16550OsAffx.29876.1.S1_at11/119+10157596..10159953ankyrin repeat family protein, putative
LOC_Os09g16560OsAffx.17743.1.S1_at10/119+10160766..10162952hypothetical protein
LOC_Os09g16570NANA9+10170261..10171249hypothetical protein
LOC_Os09g16580OsAffx.7510.2.S1_at11/119+10173376..10176698hypothetical protein
LOC_Os09g16580Os.45173.1.S1_x_at2/119+10173376..10176698hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53941.1.S1_at--660--6251Chr09:10156007..10156031 (25 bp)
GATGGGTGTGGGACCTCTACAGCAA
LOC_Os09g16540
Os.53941.1.S1_at--444--8931Chr09:10156140..10156164 (25 bp)
TGACCGGAGCGAACGGCCGTCCATG
LOC_Os09g16540
Os.53941.1.S1_at--618--10111Chr09:10156173..10156197 (25 bp)
TATGCACGCCCTGCAGTCGGAGGAG
LOC_Os09g16540
Os.53941.1.S1_at--890--6271Chr09:10156224..10156248 (25 bp)
GATGTACAAGGGTGTGCCATTTCTT
LOC_Os09g16540
Os.53941.1.S1_at--710--4431Chr09:10156239..10156263 (25 bp)
GCCATTTCTTGCCATGGGAGAACAT
LOC_Os09g16540
Os.53941.1.S1_at--437--2151Chr09:10156268..10156292 (25 bp)
ACAGCGATCTTTCAATTGGCACCAC
LOC_Os09g16540
Os.53941.1.S1_at--401--2031Chr09:10156291..10156315 (25 bp)
ACTACCAGCTCCAGTGCCAGTGGAA
LOC_Os09g16540
Os.53941.1.S1_at--926--1091Chr09:10156309..10156333 (25 bp)
AGTGGAACCGGCTGCACTGCACATT
LOC_Os09g16540
Os.53941.1.S1_at--488--9031Chr09:10156321..10156345 (25 bp)
TGCACTGCACATTCAGAGCCAACTA
LOC_Os09g16540
Os.53941.1.S1_at--355--2771Chr09:10156354..10156378 (25 bp)
AAGACGATGCCCTATTAGCGATGTA
LOC_Os09g16540
Os.53941.1.S1_at--114--10111Chr09:10156456..10156480 (25 bp)
TATGGCTGACTCCTAAGCTGTTCAT
LOC_Os09g16540
Target Sequence 
GATGGGTGTGGGACCTCTACAGCAAGAACGCCGTCGTGGAGGCGGTGGACGAGAGGCTCAGGTGCAGCGACGATGGCGAC
GACGAGCTGCAGATGGAGCGCGTGCTCGCCGTCGGGCTGTGGTGCGCGCACCCTGACCGGAGCGAACGGCCGTCCATGGC
GCAGGCTATGCACGCCCTGCAGTCGGAGGAGGCAAGGTTGCCGGCTCTTCGGCCGCAGATGTACAAGGGTGTGCCATTTC
TTGCCATGGGAGAACATAGGTACAGCGATCTTTCAATTGGCACCACTACCAGCTCCAGTGCCAGTGGAACCGGCTGCACT
GCACATTCAGAGCCAACTAAACTGTAAAAGACGATGCCCTATTAGCGATGTAAAATGCAGACTCTGACTGAAATTTATTT
TCTTGGTAAAACTGAAACTGGAACAATTGACACAGGGTGCTGTGGGAAATATGGCTGACTCCTAAGCTGTTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53941.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis