Browse Element(s) Details


Os.52634.1.S1_at

Description gb:AK068435.1
DB_XREF= gi:32978453
TID=Os.52634.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52634 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033071H21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013155N15, full insert sequence.
FL= gb:AK068435.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g165201/11Cytochrome b5-like Heme/Steroid binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g16510Os.27227.1.S1_at11/119+10127836..10130089WRKY DNA binding domain containing protein, expressed
LOC_Os09g16520OsAffx.29875.1.S1_at11/119+10130348..10137130Cytochrome b5-like Heme/Steroid binding domain containing protein, expressed
LOC_Os09g16520OsAffx.29875.1.S1_s_at10/119+10130348..10137130Cytochrome b5-like Heme/Steroid binding domain containing protein, expressed
LOC_Os09g16520OsAffx.6277.1.S1_at2/119+10130348..10137130Cytochrome b5-like Heme/Steroid binding domain containing protein, expressed
LOC_Os09g16520Os.52634.1.S1_at1/119+10130348..10137130Cytochrome b5-like Heme/Steroid binding domain containing protein, expressed
LOC_Os09g16530Os.14919.1.S1_at5/119+10138224..10144240Transposable element protein, putative, MuDR
LOC_Os09g16530OsAffx.29313.1.S1_at1/119+10138224..10144240Transposable element protein, putative, MuDR
LOC_Os09g16530Os.56216.1.S1_at1/119+10138224..10144240Transposable element protein, putative, MuDR
LOC_Os09g16540Os.53941.1.S1_at11/119+10151940..10156507Protein kinase domain containing protein, expressed
LOC_Os09g16550OsAffx.29876.1.S1_at11/119+10157596..10159953ankyrin repeat family protein, putative
LOC_Os09g16560OsAffx.17743.1.S1_at10/119+10160766..10162952hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0005789cellular_componentendoplasmic reticulum membrane
GO:0005489molecular_functionelectron transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52634.1.S1_at--796--9832Chr09:9545948..9545972 (25 bp)
TAAACCAACTATATACTGCTACCTT
NONE
Os.52634.1.S1_at--854--9911Chr09:9545961..9545985 (25 bp)
TACTGCTACCTTAGTTGCTACCTTA
NONE
Os.52634.1.S1_at--1149--6652Chr09:9545974..9545998 (25 bp)
GTTGCTACCTTAGTGTAACTTATAT
NONE
Os.52634.1.S1_at--257--3692Chr09:11533535..11533559 (25 bp)
CTATCTAAGGTTGATTACATGGTAA
NONE
Os.52634.1.S1_at--61--1916Chr12:16293164..16293187 (23 bp)
ATTTAGCTATGCATGTTTGCAAAAC
NONE
Os.52634.1.S1_at--1127--5131Chr09:9546378..9546402 (25 bp)
GCAAAACAATGTATGCTAGTGCAAC
NONE
Os.52634.1.S1_at--125--4871Chr09:9546392..9546416 (25 bp)
GCTAGTGCAACATGTTTTAATTGTA
NONE
Os.52634.1.S1_at--877--1391Chr09:9546435..9546459 (25 bp)
AGACTAATGGCGTGTGTTCCTTCGA
NONE
Os.52634.1.S1_at--1043--2951Chr09:9546440..9546464 (25 bp)
AATGGCGTGTGTTCCTTCGAATTTT
NONE
Os.52634.1.S1_at--441--5212Chr09:11533828..11533852 (25 bp)
GAATTTTTTATTCAATGGCTTGCAC
NONE
Os.52634.1.S1_at--756--9732Chr09:11533839..11533863 (25 bp)
TCAATGGCTTGCACTATTTATATGT
NONE
Target Sequence 
TAAACCAACTATATACTGCTACCTTAGTTGCTACCTTAGTGTAACTTATATATGCAATAATTTTTGGAGGAATTCATAAT
TCCATGGCGTACCATAGAGAAAAATCCATTAACATCTATGCACTTAAAAAAAGATGCAATGGTTAAATATAATTTCGCAT
GCATTTTTATTTTTGAAGTGTGGTGTATTATGAATGCGCGCTTGAATATCTATCCATGGTATATTAAAAGTGCATTAAAT
ACTATCTAAGGTTGATTACATGGTAATATAATATAGTTTAGAGCACTTACACAAAAGATTATTTGTGTTGCTCAGCTTAT
TTGAGCATACTAATTTCAATAAAATTATGAAGGTACTGTATTTTTATCCCGTGGTTTATACGATTTATATATGAGTTAGC
TTTTTTTTTTTTTATTTAGCTATGCATGTTTGCAAAACAATGTATGCTAGTGCAACATGTTTTAATTGTAATTCAGTTGA
CATGTAAAAGACTAATGGCGTGTGTTCCTTCGAATTTTTTATTCAATGGCTTGCACTATTTATATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52634.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis