Browse Element(s) Details


Os.27227.1.S1_at

Description gb:AK065265.1
DB_XREF= gi:32975283
TID=Os.27227.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.27227 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013002K14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013002K14, full insert sequence.
FL= gb:AK065265.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1651011/11WRKY DNA binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g16500NANA9+10103565..10103885hypothetical protein
LOC_Os09g16510Os.27227.1.S1_at11/119+10127836..10130089WRKY DNA binding domain containing protein, expressed
LOC_Os09g16520OsAffx.29875.1.S1_at11/119+10130348..10137130Cytochrome b5-like Heme/Steroid binding domain containing protein, expressed
LOC_Os09g16520OsAffx.29875.1.S1_s_at10/119+10130348..10137130Cytochrome b5-like Heme/Steroid binding domain containing protein, expressed
LOC_Os09g16520OsAffx.6277.1.S1_at2/119+10130348..10137130Cytochrome b5-like Heme/Steroid binding domain containing protein, expressed
LOC_Os09g16520Os.52634.1.S1_at1/119+10130348..10137130Cytochrome b5-like Heme/Steroid binding domain containing protein, expressed
LOC_Os09g16530Os.14919.1.S1_at5/119+10138224..10144240Transposable element protein, putative, MuDR
LOC_Os09g16530OsAffx.29313.1.S1_at1/119+10138224..10144240Transposable element protein, putative, MuDR
LOC_Os09g16530Os.56216.1.S1_at1/119+10138224..10144240Transposable element protein, putative, MuDR
LOC_Os09g16540Os.53941.1.S1_at11/119+10151940..10156507Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005730cellular_componentnucleolus
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27227.1.S1_at--447--5811Chr09:10129696..10129720 (25 bp)
GACGCCTTCGAGTTCGACCCCGGAT
LOC_Os09g16510
Os.27227.1.S1_at--1038--5811Chr09:10129711..10129735 (25 bp)
GACCCCGGATTCACCATTGATATCA
LOC_Os09g16510
Os.27227.1.S1_at--796--51Chr09:10129726..10129750 (25 bp)
ATTGATATCACCAGCTTCTTCGCAT
LOC_Os09g16510
Os.27227.1.S1_at--717--3371Chr09:10129734..10129758 (25 bp)
CACCAGCTTCTTCGCATGAGATTAT
LOC_Os09g16510
Os.27227.1.S1_at--217--2971Chr09:10129774..10129798 (25 bp)
AATGGTGACCAAACTCAACCCAATC
LOC_Os09g16510
Os.27227.1.S1_at--1003--6371Chr09:10129820..10129844 (25 bp)
GATCCGATCCTCACATAGCTGATGA
LOC_Os09g16510
Os.27227.1.S1_at--898--811Chr09:10129863..10129887 (25 bp)
ATGGTGACCACCCTCTGTTCTTTAG
LOC_Os09g16510
Os.27227.1.S1_at--329--1811Chr09:10129872..10129896 (25 bp)
ACCCTCTGTTCTTTAGCTGTTGCCA
LOC_Os09g16510
Os.27227.1.S1_at--775--5391Chr09:10129925..10129949 (25 bp)
GAAGCTTTCTTCCTAGGTCAATAGA
LOC_Os09g16510
Os.27227.1.S1_at--1115--9893Chr09:10129965..10129989 (25 bp)
TACTAGTACTTAATTTTTCTCTCTT
LOC_Os09g16510
Os.27227.1.S1_at--723--4211Chr09:10129996..10130020 (25 bp)
CCCCAAATGAGAGTGTTTCTTTGTA
LOC_Os09g16510
Target Sequence 
GACGCCTTCGAGTTCGACCCCGGATTCACCATTGATATCACCAGCTTCTTCGCATGAGATTATGAACAGAACCAGATCAA
TGGTGACCAAACTCAACCCAATCCAATCCAATCCAATCCAACCCGATCCGATCCTCACATAGCTGATGAACACTAGAGAA
GCAGTTCATGGTGACCACCCTCTGTTCTTTAGCTGTTGCCATGAAAGAACAGAGGAGGGAAGAAGAGCAGAAGCTTTCTT
CCTAGGTCAATAGAGATGAGAAATAGTAGTACTAGTACTTAATTTTTCTCTCTTTTTTTTCCCCAAATGAGAGTGTTTCT
TTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27227.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis