Browse Element(s) Details


OsAffx.29876.1.S1_at

Description tigr:9637.m01391
TID=OsAffx.29876.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1655011/11ankyrin repeat family protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g16520OsAffx.29875.1.S1_at11/119+10130348..10137130Cytochrome b5-like Heme/Steroid binding domain containing protein, expressed
LOC_Os09g16520OsAffx.29875.1.S1_s_at10/119+10130348..10137130Cytochrome b5-like Heme/Steroid binding domain containing protein, expressed
LOC_Os09g16520OsAffx.6277.1.S1_at2/119+10130348..10137130Cytochrome b5-like Heme/Steroid binding domain containing protein, expressed
LOC_Os09g16520Os.52634.1.S1_at1/119+10130348..10137130Cytochrome b5-like Heme/Steroid binding domain containing protein, expressed
LOC_Os09g16530Os.14919.1.S1_at5/119+10138224..10144240Transposable element protein, putative, MuDR
LOC_Os09g16530OsAffx.29313.1.S1_at1/119+10138224..10144240Transposable element protein, putative, MuDR
LOC_Os09g16530Os.56216.1.S1_at1/119+10138224..10144240Transposable element protein, putative, MuDR
LOC_Os09g16540Os.53941.1.S1_at11/119+10151940..10156507Protein kinase domain containing protein, expressed
LOC_Os09g16550OsAffx.29876.1.S1_at11/119+10157596..10159953ankyrin repeat family protein, putative
LOC_Os09g16560OsAffx.17743.1.S1_at10/119+10160766..10162952hypothetical protein
LOC_Os09g16570NANA9+10170261..10171249hypothetical protein
LOC_Os09g16580OsAffx.7510.2.S1_at11/119+10173376..10176698hypothetical protein
LOC_Os09g16580Os.45173.1.S1_x_at2/119+10173376..10176698hypothetical protein
LOC_Os09g16590OsAffx.17744.1.S1_at11/119+10184189..10185583Protein kinase domain containing protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29876.1.S1_at--1159--1791Chr09:10158105..10158129 (25 bp)
ACCGCCATGTTCAACGTGCCAGGAG
LOC_Os09g16550
OsAffx.29876.1.S1_at--917--7831Chr09:10158080..10158104 (25 bp)
GGTACAACTCCGACGGCGTGGCGAA
LOC_Os09g16550
OsAffx.29876.1.S1_at--694--5091Chr09:10157952..10157976 (25 bp)
GCACGCTCAAGCACGGCGTGGATAT
LOC_Os09g16550
OsAffx.29876.1.S1_at--647--8351Chr09:10157938..10157962 (25 bp)
GGCGTGGATATGCATGTCCCTCATC
LOC_Os09g16550
OsAffx.29876.1.S1_at--820--431Chr09:10157916..10157940 (25 bp)
ATCTTCCTCTGGATGGCGCTGATGA
LOC_Os09g16550
OsAffx.29876.1.S1_at--387--3871Chr09:10157898..10157922 (25 bp)
CTGATGAGCATGATCCTGGCGTTCA
LOC_Os09g16550
OsAffx.29876.1.S1_at--80--8531Chr09:10157852..10157876 (25 bp)
TGGACAGCACGACCACCAAGTACAT
LOC_Os09g16550
OsAffx.29876.1.S1_at--778--1171Chr09:10157834..10157858 (25 bp)
AGTACATCCTGTGGAGCATCTTCGT
LOC_Os09g16550
OsAffx.29876.1.S1_at--506--10851Chr09:10157793..10157817 (25 bp)
TTGGTCGCGCTCAGCTTCGTCTGGG
LOC_Os09g16550
OsAffx.29876.1.S1_at--741--7871Chr09:10157659..10157683 (25 bp)
GGTTTACCTGTTAGTTCTGTACTTG
LOC_Os09g16550
OsAffx.29876.1.S1_at--174--9551Chr09:10157627..10157651 (25 bp)
TCTTGAATGCTGTGGCGTTTTTCCT
LOC_Os09g16550
Target Sequence 
ACCGCCATGTTCAACGTGCCAGGAGGGTACAACTCCGACGGCGTGGCGAACCTCCGCGCGACGACGCCTTACAACGCCTT
CCTGGTGCTCGACACCGTGGCCATGGCGTCCTCCGTGATCGCCACCATGCTCCTCACCTACGGCAGGGGGGCGGCACGCT
CAAGCACGGCGTGGATATGCATGTCCCTCATCTTCCTCTGGATGGCGCTGATGAGCATGATCCTGGCGTTCATGGCCGCC
GTCGTCTCCGGGCTGGACAGCACGACCACCAAGTACATCCTGTGGAGCATCTTCGTGCTGCCGTTCGCCTTCTTGGTCGC
GCTCAGCTTCGTCTGGGCCGTGCCAGCGCCGACCTTCACCACACTGCTTCTGTTGCCTCGTGCCCTCGCCGGAGAAGACA
GTGGGTGGACGCGTCGGCGCATCGGGCGGCGTTTCCGGTCGGTGGGGGTTTACCTGTTAGTTCTGTACTTGTTCTGGTTC
TTGAATGCTGTGGCGTTTTTCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29876.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis