Browse Element(s) Details


OsAffx.9652.1.S1_x_at

Description gb:NM_189985.1
DB_XREF= gi:34907053
GEN=P0482D04.20
TID=OsAffx.9652.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (P0482D04.20), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g294882/11retrotransposon, putative, centromere-specific
LOC_Os11g225102/11hypothetical protein
LOC_Os04g176101/11hypothetical protein
LOC_Os04g095101/11hypothetical protein
LOC_Os04g094601/11hypothetical protein
LOC_Os02g224601/11hypothetical protein
LOC_Os11g229301/11hypothetical protein
LOC_Os08g030801/11Zinc knuckle family protein
LOC_Os09g166601/11hypothetical protein
LOC_Os07g164101/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g29430Os.23675.1.S1_at10/111+16822223..16830195pentatricopeptide, putative, expressed
LOC_Os01g29430Os.51910.1.S1_at1/111+16822223..16830195pentatricopeptide, putative, expressed
LOC_Os01g29430Os.51910.1.S1_x_at1/111+16822223..16830195pentatricopeptide, putative, expressed
LOC_Os01g29450NANA1+16831394..16837809retrotransposon protein, putative, unclassified
LOC_Os01g29469Os.54170.1.S1_at11/111+16838486..16845526Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os01g29469Os.16993.1.S1_at10/111+16838486..16845526Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os01g29488OsAffx.2119.1.S1_at11/111+16851634..16859548retrotransposon, putative, centromere-specific
LOC_Os01g29488OsAffx.9532.1.S1_at5/111+16851634..16859548retrotransposon, putative, centromere-specific
LOC_Os01g29488OsAffx.9652.1.S1_x_at2/111+16851634..16859548retrotransposon, putative, centromere-specific
LOC_Os01g29488OsAffx.9532.1.S1_x_at2/111+16851634..16859548retrotransposon, putative, centromere-specific
LOC_Os01g29488Os.52447.1.S1_at1/111+16851634..16859548retrotransposon, putative, centromere-specific
LOC_Os01g29488Os.52447.1.S1_x_at1/111+16851634..16859548retrotransposon, putative, centromere-specific
LOC_Os01g29488OsAffx.20947.1.S1_x_at1/111+16851634..16859548retrotransposon, putative, centromere-specific
LOC_Os01g29488Os.54774.1.S1_x_at1/111+16851634..16859548retrotransposon, putative, centromere-specific
LOC_Os01g29507OsAffx.1196.1.S1_at2/111+16867044..16872779hypothetical protein
LOC_Os01g29507OsAffx.15647.1.S1_at1/111+16867044..16872779hypothetical protein
LOC_Os01g29507OsAffx.31752.1.S1_at1/111+16867044..16872779hypothetical protein
LOC_Os01g29507OsAffx.1196.1.S1_x_at1/111+16867044..16872779hypothetical protein
LOC_Os01g29507OsAffx.17243.1.S1_at1/111+16867044..16872779hypothetical protein
LOC_Os01g29507Os.10626.4.A1_s_at1/111+16867044..16872779hypothetical protein
LOC_Os01g29530Os.52609.1.S1_at1/111+16878705..16884678retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g29530Os.46715.1.S1_at1/111+16878705..16884678retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g29530Os.51104.2.S1_at1/111+16878705..16884678retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g29530Os.46715.1.S1_x_at1/111+16878705..16884678retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9652.1.S1_x_at--797--34340Chr12:8578445..8578468 (24 bp)
CAGTTGAAGATCAAAACCGATGCAG
NONE
OsAffx.9652.1.S1_x_at--333--41115Chr12:4232523..4232546 (24 bp)
CGAAAGACTCTATCCATACGTGGCA
NONE
OsAffx.9652.1.S1_x_at--890--2752Chr12:4232525..4232549 (25 bp)
AAGACTCTATCCATACGTGGCAATC
NONE
OsAffx.9652.1.S1_x_at--637--51951Chr12:26766864..26766893 (25 bp)
GCAATCCTCATGAAGCACATCAACC
NONE
OsAffx.9652.1.S1_x_at--209--1991Chr01:40977404..40977428 (25 bp)
ACATCAACCCAATCCGACAACGTAT
NONE
OsAffx.9652.1.S1_x_at--527--551Chr01:40977415..40977439 (25 bp)
ATCCGACAACGTATGTCGTGTCATA
NONE
OsAffx.9652.1.S1_x_at--218--94345Chr11:19550389..19550411 (23 bp)
TCGTGTCATATTGTCGGATTCGGCT
NONE
OsAffx.9652.1.S1_x_at--544--7913Chr11:6562934..6563265 (25 bp)
GGATTCGGCTCAATCGGCTGACCTT
NONE
OsAffx.9652.1.S1_x_at--247--8311Chr01:40977451..40977475 (25 bp)
GGCTCAATCGGCTGACCTTGTCCAA
NONE
OsAffx.9652.1.S1_x_at--904--472Chr04:7603084..7603468 (25 bp)
ATCGGCTGACCTTGTCCAACTCGGA
NONE
OsAffx.9652.1.S1_x_at--512--8933Chr11:15200021..15200040 (20 bp)
TGACCTTGTCCAACTCGGACTCTGC
NONE
Target Sequence 
CAGTTGAAGATCAAAACCGATGCAGCTCAACTCGAAAGCAAGAACTCATCGAAACAAAACGAAAGACTCTATCCATACGT
GGCAATCCTCATGAAGCACATCAACCCAATCCGACAACGTATGTCGTGTCATATTGTCGGATTCGGCTCAATCGGCTGAC
CTTGTCCAACTCGGACTCTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9652.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis