Browse Element(s) Details


Os.51104.2.S1_at

Description gb:AK060681.1
DB_XREF= gi:32970699
TID=Os.51104.2
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51104 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-137-G02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-029-D12, full insert sequence.
FL= gb:AK060681.1 gb:AK102712.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4625011/11expressed protein
LOC_Os01g295301/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g46190OsAffx.5124.1.S1_s_at11/116+27993850..27994182hypothetical protein
LOC_Os06g46200OsAffx.5125.1.S1_at11/116+27997215..27998294hypothetical protein
LOC_Os06g46210OsAffx.5126.1.S1_at11/116+27998530..27998847hypothetical protein
LOC_Os06g46230OsAffx.15948.1.S1_at11/116+28002807..28003325hypothetical protein
LOC_Os06g46230OsAffx.15948.1.S1_x_at11/116+28002807..28003325hypothetical protein
LOC_Os06g46240Os.27277.2.S1_s_at11/116+28006251..28016492BTB/POZ domain containing protein, expressed
LOC_Os06g46240OsAffx.5127.1.S1_at11/116+28006251..28016492BTB/POZ domain containing protein, expressed
LOC_Os06g46240Os.27277.1.A1_at11/116+28006251..28016492BTB/POZ domain containing protein, expressed
LOC_Os06g46240OsAffx.3017.1.S1_x_at1/116+28006251..28016492BTB/POZ domain containing protein, expressed
LOC_Os06g46250Os.51104.2.S1_at11/116+28017187..28018817expressed protein
LOC_Os06g46260OsAffx.5128.1.S1_at10/116+28019726..28020807hypothetical protein
LOC_Os06g46270Os.51762.1.S1_at11/116+28036571..28040883NAC-domain containing protein 21/22, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51104.2.S1_at--396--6432Chr06:28017431..28017455 (25 bp)
GATCTTGTGGGTAATTTGACTCTTG
LOC_Os06g46250
Os.51104.2.S1_at--634--211Chr06:28017418..28017442 (25 bp)
ATTTGACTCTTGTTTGACCGGTTAG
LOC_Os06g46250
Os.51104.2.S1_at--912--5791Chr06:28017403..28017427 (25 bp)
GACCGGTTAGTTGCTGTTGGGATTT
LOC_Os06g46250
Os.51104.2.S1_at--937--6611Chr06:28017388..28017412 (25 bp)
GTTGGGATTTGTCTTGTTTGCTGCT
LOC_Os06g46250
Os.51104.2.S1_at--1136--10791Chr06:28017375..28017399 (25 bp)
TTGTTTGCTGCTGCCGGTATGATGA
LOC_Os06g46250
Os.51104.2.S1_at--332--10791Chr06:28017287..28017311 (25 bp)
TTGTTCTTTGGAGACGCCTCATGGA
LOC_Os06g46250
Os.51104.2.S1_at--976--5791Chr06:28017275..28017299 (25 bp)
GACGCCTCATGGAAGGTCTAATCAA
LOC_Os06g46250
Os.51104.2.S1_at--713--7811Chr06:28017261..28017285 (25 bp)
GGTCTAATCAATTGACTGTTCTTTT
LOC_Os06g46250
Os.51104.2.S1_at--166--10311Chr06:28017221..28017245 (25 bp)
TTTCTCTTAGAACTGTATATTCCGA
LOC_Os06g46250
Os.51104.2.S1_at--354--9291Chr06:28017201..28017225 (25 bp)
TCCGAATTTTGTTTCTGTCTCGCAC
LOC_Os06g46250
Os.51104.2.S1_at--559--9471Chr06:28017188..28017212 (25 bp)
TCTGTCTCGCACCATCAAAGTTGAT
LOC_Os06g46250
Target Sequence 
GATCTTGTGGGTAATTTGACTCTTGTTTGACCGGTTAGTTGCTGTTGGGATTTGTCTTGTTTGCTGCTGCCGGTATGATG
AGTGCACGGAAAGGGAAAGGGGGAGGCCATGATGAGATGATAGTTTGGTTTTAACTGATTTTGTTTGTTCTTTGGAGACG
CCTCATGGAAGGTCTAATCAATTGACTGTTCTTTTTTTCTTCTTTCTTTCTTTCTCTTAGAACTGTATATTCCGAATTTT
GTTTCTGTCTCGCACCATCAAAGTTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51104.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis