Browse Element(s) Details


OsAffx.5125.1.S1_at

Description tigr:9634.m04489
TID=OsAffx.5125.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4620011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g46160Os.40049.1.S1_at11/116+27974948..27978363expressed protein
LOC_Os06g46170Os.54287.1.S1_at2/116+27980348..27983830hypothetical protein
LOC_Os06g46180Os.1709.1.S1_x_at7/116+27984428..27990319retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g46190OsAffx.5124.1.S1_s_at11/116+27993850..27994182hypothetical protein
LOC_Os06g46200OsAffx.5125.1.S1_at11/116+27997215..27998294hypothetical protein
LOC_Os06g46210OsAffx.5126.1.S1_at11/116+27998530..27998847hypothetical protein
LOC_Os06g46230OsAffx.15948.1.S1_at11/116+28002807..28003325hypothetical protein
LOC_Os06g46230OsAffx.15948.1.S1_x_at11/116+28002807..28003325hypothetical protein
LOC_Os06g46240Os.27277.2.S1_s_at11/116+28006251..28016492BTB/POZ domain containing protein, expressed
LOC_Os06g46240OsAffx.5127.1.S1_at11/116+28006251..28016492BTB/POZ domain containing protein, expressed
LOC_Os06g46240Os.27277.1.A1_at11/116+28006251..28016492BTB/POZ domain containing protein, expressed
LOC_Os06g46240OsAffx.3017.1.S1_x_at1/116+28006251..28016492BTB/POZ domain containing protein, expressed
LOC_Os06g46250Os.51104.2.S1_at11/116+28017187..28018817expressed protein
LOC_Os06g46260OsAffx.5128.1.S1_at10/116+28019726..28020807hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5125.1.S1_at--1129--2611Chr06:27997302..27997326 (25 bp)
AACCGTTGCCATGTGGTTCCTTTGC
LOC_Os06g46200
OsAffx.5125.1.S1_at--464--791Chr06:27997312..27997336 (25 bp)
ATGTGGTTCCTTTGCTACTATGGTC
LOC_Os06g46200
OsAffx.5125.1.S1_at--315--7911Chr06:27997316..27997340 (25 bp)
GGTTCCTTTGCTACTATGGTCCAAA
LOC_Os06g46200
OsAffx.5125.1.S1_at--302--11Chr06:27997320..27997340 (21 bp)
CCTTTGCTACTATGGTCCAAACCCA
LOC_Os06g46200
OsAffx.5125.1.S1_at--971--391Chr06:27997851..27997875 (25 bp)
ATCATCGCGGTCGTCAGCGACGGAT
LOC_Os06g46200
OsAffx.5125.1.S1_at--663--9291Chr06:27997942..27997966 (25 bp)
TCCCCACGGAGGCTGGCGATGAATC
LOC_Os06g46200
OsAffx.5125.1.S1_at--729--6211Chr06:27997950..27997974 (25 bp)
GAGGCTGGCGATGAATCCGGCATCC
LOC_Os06g46200
OsAffx.5125.1.S1_at--757--4051Chr06:27998006..27998030 (25 bp)
CGATGCCACTGTCGTAGCCGTAGTC
LOC_Os06g46200
OsAffx.5125.1.S1_at--90--9413Chr06:27998017..27998041 (25 bp)
TCGTAGCCGTAGTCGATGCCGCCGC
LOC_Os06g46200
OsAffx.5125.1.S1_at--839--5751Chr06:27998058..27998082 (25 bp)
GACGGTGCCGCAGTCGCCAAGGACA
LOC_Os06g46200
OsAffx.5125.1.S1_at--1056--4511Chr06:27998064..27998088 (25 bp)
GCCGCAGTCGCCAAGGACAAGAGGA
LOC_Os06g46200
Target Sequence 
AACCGTTGCCATGTGGTTCCTTTGCTACTATGGTCCAAACCCACCGTCATCGTCGCTGCCTTCCCGAAGCCTGCTGCCGT
CATCATCGCGGTCGTCAGCGACGGATCCGGCCTCCCCGCGGTGGCAAGTCACGGATCCGGCATCCCAGAGGTGGCAGGCC
ATGGATCCGGCCTCCCCACGGAGGCTGGCGATGAATCCGGCATCCCCGAGGTGGCAGGCCACGGATCCAGCCTCCCCGAT
GCCACTGTCGTAGCCGTAGTCGATGCCGCCGCCTCTGCCGCCCTAGCCGACGGTGCCGCAGTCGCCAAGGACAAGAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5125.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis