Browse Element(s) Details


Os.40049.1.S1_at

Description gb:CF327010
DB_XREF= gi:33802275
DB_XREF=NACL--01-F02.g1
CLONE=NACL--01-F02
TID=Os.40049.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.40049 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4616011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g46120OsAffx.15946.1.S1_x_at11/116+27952478..27959356Ubiquitin family protein, expressed
LOC_Os06g46120Os.18037.1.S1_at11/116+27952478..27959356Ubiquitin family protein, expressed
LOC_Os06g46120Os.48093.1.S1_at10/116+27952478..27959356Ubiquitin family protein, expressed
LOC_Os06g46149Os.6070.1.A1_at10/116+27959876..27969197expressed protein
LOC_Os06g46140Os.52280.1.S1_at11/116+27961697..27963031expressed protein
LOC_Os06g46160Os.40049.1.S1_at11/116+27974948..27978363expressed protein
LOC_Os06g46170Os.54287.1.S1_at2/116+27980348..27983830hypothetical protein
LOC_Os06g46180Os.1709.1.S1_x_at7/116+27984428..27990319retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g46190OsAffx.5124.1.S1_s_at11/116+27993850..27994182hypothetical protein
LOC_Os06g46200OsAffx.5125.1.S1_at11/116+27997215..27998294hypothetical protein
LOC_Os06g46210OsAffx.5126.1.S1_at11/116+27998530..27998847hypothetical protein
LOC_Os06g46230OsAffx.15948.1.S1_at11/116+28002807..28003325hypothetical protein
LOC_Os06g46230OsAffx.15948.1.S1_x_at11/116+28002807..28003325hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.40049.1.S1_at--950--3031Chr06:27977713..27977839 (25 bp)
AATCGATCGAAGATGGTCGAGGGCC
LOC_Os06g46160
Os.40049.1.S1_at--44--1431Chr06:27977603..27977627 (25 bp)
AGAAAAGGTTCCTGCAGATCTGCAA
LOC_Os06g46160
Os.40049.1.S1_at--294--1131Chr06:27975391..27975411 (21 bp)
AGTGCAGGTGCAACGCGATGCCAGT
LOC_Os06g46160
Os.40049.1.S1_at--574--3851Chr06:27975363..27975387 (25 bp)
CTGAATAATCAGCATGCCCGGAAGA
LOC_Os06g46160
Os.40049.1.S1_at--530--9171Chr06:27975349..27975373 (25 bp)
TGCCCGGAAGAAGTACTGGCTGCTG
LOC_Os06g46160
Os.40049.1.S1_at--1114--8571Chr06:27975321..27975345 (25 bp)
TGGTTCCTGATCGTTGTTTGGGTGA
LOC_Os06g46160
Os.40049.1.S1_at--77--6871Chr06:27975306..27975330 (25 bp)
GTTTGGGTGATGATTCTGACAGATC
LOC_Os06g46160
Os.40049.1.S1_at--1071--5731Chr06:27975267..27975291 (25 bp)
GACGGAGACCAACAAAACGATCATG
LOC_Os06g46160
Os.40049.1.S1_at--880--2051Chr06:27975114..27975138 (25 bp)
ACTTCTGCTCTCACAGTTCATGTGT
LOC_Os06g46160
Os.40049.1.S1_at--1012--6171Chr06:27975067..27975091 (25 bp)
GAGGAGAGCACGTTTGCAACTCAAT
LOC_Os06g46160
Os.40049.1.S1_at--744--3151Chr06:27975010..27975034 (25 bp)
AATTCGCTGGGACTTGTATGACTTA
LOC_Os06g46160
Target Sequence 
AATCGATCGAAGATGGTCGAGGGCCTCGAGGCGGCGAAGGACGTGGTGGACTTGGAGAAGGCGATCGACATCATCGATGC
TGCTGCTGTTGTTGAGGCAATAGCTGGAGAAGAAAAGGTTCCTGCAGATCTGCAAGTGCAGGTGCAACGCGATGCCAGTA
AGCTGAATAATCAGCATGCCCGGAAGAAGTACTGGCTGCTGCTGTGGTTCCTGATCGTTGTTTGGGTGATGATTCTGACA
GATCATTTNCTTCGACGTCGACGGAGACCAACAAAACGATCATGCCNAANTCCGACAGNCCGCATTCCACGCTCGCCAAG
NTCATCGGCTTCCTGAGNGNCATCTGNCTCATGNTTCGCGCCCTTGATTAAACGGNGGCAGNTGCGNNGTCACTGGGCCN
TACTATCTGCGCGTCACTTCTGCTCTCACAGTTCATGTGTTAAATTTGTTCTTTTATGGGACGAGGAGAGCACGTTTGCA
ACTCAATTATAAGTACTATGACTTATGATTGTAATAATAAATTCGCTGGGACTTGTATGACTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.40049.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis