Browse Element(s) Details


Os.6070.1.A1_at

Description gb:AK066949.1
DB_XREF= gi:32976967
TID=Os.6070.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6070 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013089M08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013089M08, full insert sequence.
FL= gb:AK066949.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4614910/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g46080OsAffx.28128.1.S1_at11/116+27940760..27941132hypothetical protein
LOC_Os06g46090OsAffx.28129.1.S1_x_at10/116+27944401..27945106expressed protein
LOC_Os06g46090OsAffx.28129.1.S1_at10/116+27944401..27945106expressed protein
LOC_Os06g46100OsAffx.28130.1.S1_at11/116+27947244..27947888hypothetical protein
LOC_Os06g46100OsAffx.27736.1.S1_at2/116+27947244..27947888hypothetical protein
LOC_Os06g46110OsAffx.5123.1.S1_at11/116+27948954..27949217hypothetical protein
LOC_Os06g46120OsAffx.15946.1.S1_x_at11/116+27952478..27959356Ubiquitin family protein, expressed
LOC_Os06g46120Os.18037.1.S1_at11/116+27952478..27959356Ubiquitin family protein, expressed
LOC_Os06g46120Os.48093.1.S1_at10/116+27952478..27959356Ubiquitin family protein, expressed
LOC_Os06g46149Os.6070.1.A1_at10/116+27959876..27969197expressed protein
LOC_Os06g46140Os.52280.1.S1_at11/116+27961697..27963031expressed protein
LOC_Os06g46160Os.40049.1.S1_at11/116+27974948..27978363expressed protein
LOC_Os06g46170Os.54287.1.S1_at2/116+27980348..27983830hypothetical protein
LOC_Os06g46180Os.1709.1.S1_x_at7/116+27984428..27990319retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g46190OsAffx.5124.1.S1_s_at11/116+27993850..27994182hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6070.1.A1_at--296--4691Chr06:27968556..27968580 (25 bp)
GCGGCGCCGGTGAACTTCACTGTTG
LOC_Os06g46149
Os.6070.1.A1_at--804--10511Chr06:27968571..27968595 (25 bp)
TTCACTGTTGGACAGCAGCCTGCAA
LOC_Os06g46149
Os.6070.1.A1_at--204--3931Chr06:27968615..27968639 (25 bp)
CGGCCAGACCGGAACCAAGCATGAA
LOC_Os06g46149
Os.6070.1.A1_at--685--5351Chr06:27968640..27968664 (25 bp)
GAAGATCGACACCTTGGCGTATGAA
LOC_Os06g46149
Os.6070.1.A1_at--890--4591Chr06:27968656..27968680 (25 bp)
GCGTATGAATACTGACCACCCAATT
LOC_Os06g46149
Os.6070.1.A1_at--996--3351Chr06:27968672..27968696 (25 bp)
CACCCAATTTCTCTGTCTTGTGATA
LOC_Os06g46149
Os.6070.1.A1_at--531--5571Chr06:27968977..27969001 (25 bp)
GAAAGTTTCAGCTGGTTGATGGCGC
LOC_Os06g46149
Os.6070.1.A1_at--783--8691Chr06:27969008..27969032 (25 bp)
TGTGCTCTGGCTTGATTGTCATCAA
LOC_Os06g46149
Os.6070.1.A1_at--268--51Chr06:27969022..27969046 (25 bp)
ATTGTCATCAACTTCAGGGTGTGGA
LOC_Os06g46149
Os.6070.1.A1_at--924--8011NONE
GGAGGAGGCAAATTTCAGTCCGAGT
NONE
Os.6070.1.A1_at--893--8191Chr06:27969112..27969136 (25 bp)
GGAAGTTTGAGTGCATCTCCACGAA
LOC_Os06g46149
Target Sequence 
GCGGCGCCGGTGAACTTCACTGTTGGACAGCAGCCTGCAAAGGAGCAGCGCCAAGATTCCGGCCAGACCGGAACCAAGCA
TGAAGAAGATCGACACCTTGGCGTATGAATACTGACCACCCAATTTCTCTGTCTTGTGATAGATTCCAAGGAGATCTCCA
ATAAAACCAGAGAATGATGTGGTCACCAAAGATAAGTGAAAGACACCAACAAGGATGGAAGGGACCAATGAAATGGGCAG
GAAGTAATAAGCCTTAGGAAGCAGAGAACAAGTGATGGAAATAAATGACAAAATAAGGGAGGATATGGAGGTAGCCAAGA
GGACTATGGAAAGTTTCAGCTGGTTGATGGCGCTGATGATGTGCTCTGGCTTGATTGTCATCAACTTCAGGGTGTGGAAC
ATGAGGGAAATTGCGGTGACAAAGGCTGTGAATGCAAAGGAGGAGGCAAATTTCAGTCCGAGTGGAAGTTTGAGTGCATC
TCCACGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6070.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis