Browse Element(s) Details


Os.48093.1.S1_at

Description gb:AK070761.1
DB_XREF= gi:32980784
TID=Os.48093.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.48093 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023067D20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023067D20, full insert sequence.
FL= gb:AK070761.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4612010/11Ubiquitin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g46070OsAffx.5122.1.S1_at10/116+27933526..27934660hypothetical protein
LOC_Os06g46080OsAffx.28128.1.S1_at11/116+27940760..27941132hypothetical protein
LOC_Os06g46090OsAffx.28129.1.S1_x_at10/116+27944401..27945106expressed protein
LOC_Os06g46090OsAffx.28129.1.S1_at10/116+27944401..27945106expressed protein
LOC_Os06g46100OsAffx.28130.1.S1_at11/116+27947244..27947888hypothetical protein
LOC_Os06g46100OsAffx.27736.1.S1_at2/116+27947244..27947888hypothetical protein
LOC_Os06g46110OsAffx.5123.1.S1_at11/116+27948954..27949217hypothetical protein
LOC_Os06g46120OsAffx.15946.1.S1_x_at11/116+27952478..27959356Ubiquitin family protein, expressed
LOC_Os06g46120Os.18037.1.S1_at11/116+27952478..27959356Ubiquitin family protein, expressed
LOC_Os06g46120Os.48093.1.S1_at10/116+27952478..27959356Ubiquitin family protein, expressed
LOC_Os06g46149Os.6070.1.A1_at10/116+27959876..27969197expressed protein
LOC_Os06g46140Os.52280.1.S1_at11/116+27961697..27963031expressed protein
LOC_Os06g46160Os.40049.1.S1_at11/116+27974948..27978363expressed protein
LOC_Os06g46170Os.54287.1.S1_at2/116+27980348..27983830hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006464biological_processprotein modification
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0007568biological_processaging
GO:0005622cellular_componentintracellular
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48093.1.S1_at--515--1471Chr06:27952658..27952682 (25 bp)
AGCAATTCCAACACGGGGCGATTAT
LOC_Os06g46120
Os.48093.1.S1_at--703--8311Chr06:27952642..27952666 (25 bp)
GGCGATTATAAGAATTTTTGGTATC
LOC_Os06g46120
Os.48093.1.S1_at--223--7431Chr06:27952615..27952639 (25 bp)
GTGTTTATAGGTTTGTGCGTGTATG
LOC_Os06g46120
Os.48093.1.S1_at--1024--10051Chr06:27952608..27952632 (25 bp)
TAGGTTTGTGCGTGTATGGTATATT
LOC_Os06g46120
Os.48093.1.S1_at--38--4671Chr06:27952599..27952623 (25 bp)
GCGTGTATGGTATATTGGTATGTGC
LOC_Os06g46120
Os.48093.1.S1_at--151--31Chr06:27952586..27952610 (25 bp)
ATTGGTATGTGCTTCATAGAACACC
LOC_Os06g46120
Os.48093.1.S1_at--399--5491Chr06:27952568..27952592 (25 bp)
GAACACCAATCATGTGTATATATAT
LOC_Os06g46120
Os.48093.1.S1_at--794--8639Chr12:26903134..26903157 (24 bp)
TGAGTAAAGTGTATTGGCGGTCCTT
NONE
Os.48093.1.S1_at--389--4311Chr06:27952517..27952541 (25 bp)
CCTTAAACTTGTAGGATTATGACAT
LOC_Os06g46120
Os.48093.1.S1_at--789--7931Chr06:27952504..27952528 (25 bp)
GGATTATGACATATAGGTCCCTAAA
LOC_Os06g46120
Os.48093.1.S1_at--808--4951Chr06:27952469..27952493 (25 bp)
GCATATTCAGATTCCAGAATTTGTC
NONE
Target Sequence 
AGCAATTCCAACACGGGGCGATTATAAGAATTTTTGGTATCGNGTGTTTATAGGTTTGTGCGTGTATGGTATATTGGTAT
GTGCTTCATAGAACACCAATCATGTGTATATATATTTATATGAGTAAAGTGTATTGGCGGTCCTTAAACTTGTAGGATTA
TGACATATAGGTCCCTAAACTCTNNNAATGCATATTCAGATTCCAGAATTTGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48093.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis