Browse Element(s) Details


Os.18037.1.S1_at

Description gb:CR289356
DB_XREF= gi:44675922
DB_XREF=CR289356
CLONE=p802b08p3
TID=Os.18037.1
CNT=9
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.18037 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with strong similarity to protein ref:NP_568397.1 (A.thaliana) polyubiquitin
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4612011/11Ubiquitin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g46070OsAffx.5122.1.S1_at10/116+27933526..27934660hypothetical protein
LOC_Os06g46080OsAffx.28128.1.S1_at11/116+27940760..27941132hypothetical protein
LOC_Os06g46090OsAffx.28129.1.S1_x_at10/116+27944401..27945106expressed protein
LOC_Os06g46090OsAffx.28129.1.S1_at10/116+27944401..27945106expressed protein
LOC_Os06g46100OsAffx.28130.1.S1_at11/116+27947244..27947888hypothetical protein
LOC_Os06g46100OsAffx.27736.1.S1_at2/116+27947244..27947888hypothetical protein
LOC_Os06g46110OsAffx.5123.1.S1_at11/116+27948954..27949217hypothetical protein
LOC_Os06g46120OsAffx.15946.1.S1_x_at11/116+27952478..27959356Ubiquitin family protein, expressed
LOC_Os06g46120Os.18037.1.S1_at11/116+27952478..27959356Ubiquitin family protein, expressed
LOC_Os06g46120Os.48093.1.S1_at10/116+27952478..27959356Ubiquitin family protein, expressed
LOC_Os06g46149Os.6070.1.A1_at10/116+27959876..27969197expressed protein
LOC_Os06g46140Os.52280.1.S1_at11/116+27961697..27963031expressed protein
LOC_Os06g46160Os.40049.1.S1_at11/116+27974948..27978363expressed protein
LOC_Os06g46170Os.54287.1.S1_at2/116+27980348..27983830hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006464biological_processprotein modification
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0007568biological_processaging
GO:0005622cellular_componentintracellular
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18037.1.S1_at--835--7531Chr06:27957814..27957838 (25 bp)
GTGGCTTTGCGCAAATGAAGTTTGT
LOC_Os06g46120
Os.18037.1.S1_at--261--7751Chr06:27957786..27957810 (25 bp)
GGTGTTAGTTTCAAGTTCCCATTTG
LOC_Os06g46120
Os.18037.1.S1_at--657--10651Chr06:27957771..27957795 (25 bp)
TTCCCATTTGGGTTTCAGTCATCGT
LOC_Os06g46120
Os.18037.1.S1_at--884--7851Chr06:27957761..27957785 (25 bp)
GGTTTCAGTCATCGTCGTGACACGA
LOC_Os06g46120
Os.18037.1.S1_at--725--7191Chr06:27957748..27957772 (25 bp)
GTCGTGACACGATATATGTTAAGAA
LOC_Os06g46120
Os.18037.1.S1_at--139--2471Chr06:27957725..27957749 (25 bp)
AACAACTCTAGTTAGCATCCTGCTT
LOC_Os06g46120
Os.18037.1.S1_at--568--6731Chr06:27957700..27957724 (25 bp)
GTTCTTGATACTTGTCCCTGTTTTT
LOC_Os06g46120
Os.18037.1.S1_at--1035--6471Chr06:27957694..27957718 (25 bp)
GATACTTGTCCCTGTTTTTCAGAAA
LOC_Os06g46120
Os.18037.1.S1_at--154--10211Chr06:27957636..27957660 (25 bp)
TATTTCCAGAAAACGGTATGCTTGT
LOC_Os06g46120
Os.18037.1.S1_at--889--2571Chr06:27957625..27957649 (25 bp)
AACGGTATGCTTGTGCCATTAGACT
LOC_Os06g46120
Os.18037.1.S1_at--45--10831Chr06:27957615..27957639 (25 bp)
TTGTGCCATTAGACTTTGCTCAAGG
LOC_Os06g46120
Target Sequence 
GTGGCTTTGCGCAAATGAAGTTTGTGATGGTGTTAGTTTCAAGTTCCCATTTGGGTTTCAGTCATCGTCGTGACACGATA
TATGTTAAGAACAACTCTAGTTAGCATCCTGCTTGTTCTTGATACTTGTCCCTGTTTTTCAGAAAAATCAATCCTGCTTA
TTCTGGATATGTGTTCTTTATTTCCAGAAAACGGTATGCTTGTGCCATTAGACTTTGCTCAAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18037.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis