Browse Element(s) Details


OsAffx.15946.1.S1_x_at

Description tigr:9634.m04485
TID=OsAffx.15946.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=ubiquitin precursor - barley (fragment)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4612011/11Ubiquitin family protein, expressed
LOC_Os06g460602/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g46070OsAffx.5122.1.S1_at10/116+27933526..27934660hypothetical protein
LOC_Os06g46080OsAffx.28128.1.S1_at11/116+27940760..27941132hypothetical protein
LOC_Os06g46090OsAffx.28129.1.S1_x_at10/116+27944401..27945106expressed protein
LOC_Os06g46090OsAffx.28129.1.S1_at10/116+27944401..27945106expressed protein
LOC_Os06g46100OsAffx.28130.1.S1_at11/116+27947244..27947888hypothetical protein
LOC_Os06g46100OsAffx.27736.1.S1_at2/116+27947244..27947888hypothetical protein
LOC_Os06g46110OsAffx.5123.1.S1_at11/116+27948954..27949217hypothetical protein
LOC_Os06g46120OsAffx.15946.1.S1_x_at11/116+27952478..27959356Ubiquitin family protein, expressed
LOC_Os06g46120Os.18037.1.S1_at11/116+27952478..27959356Ubiquitin family protein, expressed
LOC_Os06g46120Os.48093.1.S1_at10/116+27952478..27959356Ubiquitin family protein, expressed
LOC_Os06g46149Os.6070.1.A1_at10/116+27959876..27969197expressed protein
LOC_Os06g46140Os.52280.1.S1_at11/116+27961697..27963031expressed protein
LOC_Os06g46160Os.40049.1.S1_at11/116+27974948..27978363expressed protein
LOC_Os06g46170Os.54287.1.S1_at2/116+27980348..27983830hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006464biological_processprotein modification
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0007568biological_processaging
GO:0005622cellular_componentintracellular
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15946.1.S1_x_at--98--4911Chr06:27953309..27953333 (25 bp)
GCTTCTTGCGTTGATGACCTGGTTC
LOC_Os06g46120
OsAffx.15946.1.S1_x_at--464--911Chr06:27953272..27953296 (25 bp)
AGGCTCTACGGTTTTCAAATCGCTT
LOC_Os06g46120
OsAffx.15946.1.S1_x_at--876--6871Chr06:27953242..27953266 (25 bp)
GTATATTATCATCAGCACGGTGGCA
LOC_Os06g46120
OsAffx.15946.1.S1_x_at--1161--1691Chr06:27953212..27953236 (25 bp)
AGCCAAGGTGTAGCAGCGCCAGCAA
LOC_Os06g46120
OsAffx.15946.1.S1_x_at--563--1651Chr06:27953198..27953222 (25 bp)
AGCGCCAGCAAGCACAGGACGTTAA
LOC_Os06g46120
OsAffx.15946.1.S1_x_at--831--8091Chr06:27953182..27953206 (25 bp)
GGACGTTAAGACACATACCACTAAT
LOC_Os06g46120
OsAffx.15946.1.S1_x_at--343--5511Chr06:27953102..27953126 (25 bp)
GAAAATCTAGACCACGGGATCTGAT
LOC_Os06g46120
OsAffx.15946.1.S1_x_at--479--352Chr03:9762807..9762991 (25 bp)
ATAACTCGTGTGTGCTGCCCTGAAA
NONE
OsAffx.15946.1.S1_x_at--413--5552Chr06:27953017..27953041 (25 bp)
GAAACCCTCAGTGTCATGTTCATGC
LOC_Os06g46120
OsAffx.15946.1.S1_x_at--981--732Chr06:27953002..27953026 (25 bp)
ATGTTCATGCCATATGGGATCCCAT
LOC_Os06g46120
OsAffx.15946.1.S1_x_at--652--10831Chr06:27952787..27952811 (25 bp)
TTGTGGTCTGGCTTGGTCACTGAAC
LOC_Os06g46120
Target Sequence 
GCTTCTTGCGTTGATGACCTGGTTCATCGGCTGCCTCAGGCTCTACGGTTTTCAAATCGCTTTTCCTGTATATTATCATC
AGCACGGTGGCAACAACAGCCAAGGTGTAGCAGCGCCAGCAAGCACAGGACGTTAAGACACATACCACTAATTCTTTTGT
TGCAAACCATCCTATAAAAGCAGGGAATGGATCAACCATGACTTGTTGAAAATCTAGACCACGGGATCTGATATATTTTC
CTAATTCACATATAATTGGTTTTATTCTTACATAACTCGTGTGTGCTGCCCTGAAACCCTCAGTGTCATGTTCATGCCAT
ATGGGATCCCATGCGAGGATGGAATGGTGAATAATGCAGAGATGGAGGAGGAGAACGCCATTCCGGATGAGGGCAGTCTG
GCCTGGAGCGGCTACGCCCTGATGGTCTTATCAGTGTTGGCATTGTGGTCTGGCTTGGTCACTGAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15946.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis