Browse Element(s) Details


Os.52280.1.S1_at

Description gb:AK066054.1
DB_XREF= gi:32976072
TID=Os.52280.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52280 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013050P13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013050P13, full insert sequence.
FL= gb:AK066054.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4614011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g46080OsAffx.28128.1.S1_at11/116+27940760..27941132hypothetical protein
LOC_Os06g46090OsAffx.28129.1.S1_x_at10/116+27944401..27945106expressed protein
LOC_Os06g46090OsAffx.28129.1.S1_at10/116+27944401..27945106expressed protein
LOC_Os06g46100OsAffx.28130.1.S1_at11/116+27947244..27947888hypothetical protein
LOC_Os06g46100OsAffx.27736.1.S1_at2/116+27947244..27947888hypothetical protein
LOC_Os06g46110OsAffx.5123.1.S1_at11/116+27948954..27949217hypothetical protein
LOC_Os06g46120OsAffx.15946.1.S1_x_at11/116+27952478..27959356Ubiquitin family protein, expressed
LOC_Os06g46120Os.18037.1.S1_at11/116+27952478..27959356Ubiquitin family protein, expressed
LOC_Os06g46120Os.48093.1.S1_at10/116+27952478..27959356Ubiquitin family protein, expressed
LOC_Os06g46149Os.6070.1.A1_at10/116+27959876..27969197expressed protein
LOC_Os06g46140Os.52280.1.S1_at11/116+27961697..27963031expressed protein
LOC_Os06g46160Os.40049.1.S1_at11/116+27974948..27978363expressed protein
LOC_Os06g46170Os.54287.1.S1_at2/116+27980348..27983830hypothetical protein
LOC_Os06g46180Os.1709.1.S1_x_at7/116+27984428..27990319retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52280.1.S1_at--1046--6751Chr06:27962252..27962276 (25 bp)
GTTAATTATCGATCTATACCCTGTC
LOC_Os06g46140
Os.52280.1.S1_at--671--311Chr06:27962237..27962261 (25 bp)
ATACCCTGTCGACATGCATCTATCT
LOC_Os06g46140
Os.52280.1.S1_at--252--6491Chr06:27962116..27962140 (25 bp)
GATACGCATGCAATTTCGCGCTTGC
LOC_Os06g46140
Os.52280.1.S1_at--849--9511Chr06:27962084..27962108 (25 bp)
TCTCTCTACGACTATATCCAGCTAA
LOC_Os06g46140
Os.52280.1.S1_at--402--4831Chr06:27962064..27962088 (25 bp)
GCTAATTGTCTGGAAGATCTCTGCC
LOC_Os06g46140
Os.52280.1.S1_at--801--9511Chr06:27962047..27962071 (25 bp)
TCTCTGCCCTCACGTGTATATGAAA
LOC_Os06g46140
Os.52280.1.S1_at--211--8192Chr01:8214626..8214645 (20 bp)
GGAAGATTTATCTCAAACACCACCA
NONE
Os.52280.1.S1_at--695--2851Chr06:27961966..27961990 (25 bp)
AAGTCCCAGGATGTGCATGCGCTCG
LOC_Os06g46140
Os.52280.1.S1_at--950--6411Chr06:27961942..27961966 (25 bp)
GATCTCTGTTTTTCTGTCAACCTAG
LOC_Os06g46140
Os.52280.1.S1_at--593--7871Chr06:27961778..27961802 (25 bp)
GGTTTCGCTGGATGCATACTTGCTA
LOC_Os06g46140
Os.52280.1.S1_at--548--3011Chr06:27961724..27961748 (25 bp)
AATGAAGTTGTGTACTCCTCAAGAA
LOC_Os06g46140
Target Sequence 
GTTAATTATCGATCTATACCCTGTCGACATGCATCTATCTCCACCTCGATCTCCTCAAGAAGAGAGAGAGATCCATCTAC
CCTCTCTGATCTCTTGATCATTCATTCTTGGAAGCATTTCTACTGAATAATCTTGTGATACGCATGCAATTTCGCGCTTG
CGTGCGTTTCTCTCTACGACTATATCCAGCTAATTGTCTGGAAGATCTCTGCCCTCACGTGTATATGAAAAATACAAAAG
CTAGGATCGATTTGATGGAAGATTTATCTCAAACACCACCACCACCAAGTCCCAGGATGTGCATGCGCTCGATCTCTGTT
TTTCTGTCAACCTAGATAGCTTCAAGGTGAAGCATCAAAGAGGACGATGCTATTATATTGTAATCTGAAGACTAATGTGT
TGGCTTAATTTGTATATATCCAAGTGTACTACAGTACTACTACGTACGTACTCTCTGTTATGATGAGATCTAGGGGTTTC
GCTGGATGCATACTTGCTACATATGGACAAGCATGCATGCATAAATTAAATGAAGTTGTGTACTCCTCAAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52280.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis