Browse Element(s) Details


OsAffx.28129.1.S1_x_at

Description tigr:9634.m04482
TID=OsAffx.28129.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4609010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g46060Os.49463.1.S1_at11/116+27922527..27925282expressed protein
LOC_Os06g46060OsAffx.15946.1.S1_x_at2/116+27922527..27925282expressed protein
LOC_Os06g46070OsAffx.5122.1.S1_at10/116+27933526..27934660hypothetical protein
LOC_Os06g46080OsAffx.28128.1.S1_at11/116+27940760..27941132hypothetical protein
LOC_Os06g46090OsAffx.28129.1.S1_x_at10/116+27944401..27945106expressed protein
LOC_Os06g46090OsAffx.28129.1.S1_at10/116+27944401..27945106expressed protein
LOC_Os06g46100OsAffx.28130.1.S1_at11/116+27947244..27947888hypothetical protein
LOC_Os06g46100OsAffx.27736.1.S1_at2/116+27947244..27947888hypothetical protein
LOC_Os06g46110OsAffx.5123.1.S1_at11/116+27948954..27949217hypothetical protein
LOC_Os06g46120OsAffx.15946.1.S1_x_at11/116+27952478..27959356Ubiquitin family protein, expressed
LOC_Os06g46120Os.18037.1.S1_at11/116+27952478..27959356Ubiquitin family protein, expressed
LOC_Os06g46120Os.48093.1.S1_at10/116+27952478..27959356Ubiquitin family protein, expressed
LOC_Os06g46149Os.6070.1.A1_at10/116+27959876..27969197expressed protein
LOC_Os06g46140Os.52280.1.S1_at11/116+27961697..27963031expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28129.1.S1_x_at--34--3431Chr06:27945052..27945076 (25 bp)
CAGAGCGTGACATGGCCTCACCGTC
LOC_Os06g46090
OsAffx.28129.1.S1_x_at--175--3831Chr06:27944619..27945049 (25 bp)
CTGCCTCTAGCGCTGCTGGTGCCGA
LOC_Os06g46090
OsAffx.28129.1.S1_x_at--1044--9991NONE
TAGCGCTGCTGGTGCCGACTGCTCT
NONE
OsAffx.28129.1.S1_x_at--1129--1971Chr06:27944595..27944619 (25 bp)
ACTGCTCTCGTCCTGTTGTTGCGGG
LOC_Os06g46090
OsAffx.28129.1.S1_x_at--1012--7891Chr06:27944571..27944595 (25 bp)
GGTTCTCCATCGGATCACCTTCGAA
LOC_Os06g46090
OsAffx.28129.1.S1_x_at--1131--371Chr06:27944558..27944582 (25 bp)
ATCACCTTCGAACGGCGAGCTATGA
LOC_Os06g46090
OsAffx.28129.1.S1_x_at--805--1691Chr06:27944512..27944536 (25 bp)
AGCCACCGGCAAGAGTGCTACTGGT
LOC_Os06g46090
OsAffx.28129.1.S1_x_at--104--10391Chr06:27944488..27944512 (25 bp)
TTTTGCTCAAGTAAAGGTTGTGCCG
LOC_Os06g46090
OsAffx.28129.1.S1_x_at--68--9731Chr06:27944482..27944506 (25 bp)
TCAAGTAAAGGTTGTGCCGGCCCAC
LOC_Os06g46090
OsAffx.28129.1.S1_x_at--571--6631Chr06:27944472..27944496 (25 bp)
GTTGTGCCGGCCCACTTCGTCTTCT
LOC_Os06g46090
OsAffx.28129.1.S1_x_at--187--2731Chr06:27944431..27944455 (25 bp)
AAGAAAAGCGGTCTTCTTCCTGATC
LOC_Os06g46090
Target Sequence 
CAGAGCGTGACATGGCCTCACCGTCTCCTGCCTCTAGCGCTGCTGGTGCCGACTGCTCTCGTCCTGTTGTTGCGGGGTTC
TCCATCGGATCACCTTCGAACGGCGAGCTATGACGACGGCGGGTTCCCTTCCCTAGCCACCGGCAAGAGTGCTACTGGTT
TTGCTCAAGTAAAGGTTGTGCCGGCCCACTTCGTCTTCTCCGGCGAGCCCCTTTCAAGAAAAGCGGTCTTCTTCCTGATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28129.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis